K31524

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31524

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31524

Determination of introduced cDNA(s)

  • J023007C07 - Rice Full-length cDNAs - Original: J023007C07

    full reading [+] show sequence

    Nucleotide sequence: J023007C07 - full reading 
    GCTTTTCCAA CGACTTCTTC TTCTTCCTGC TCTACCTTCT TGGCTTTTGC 
    CTCTGTTCCT CTTCCAAGAT TTGCGAGATG GTGGCGGTGA CGCCGGGCAG 
    GCGCCGCCGG CCTGCAGGAT GCGCCGCGGG GCACCACCAC CAGCACCAGC 
    AGCAGAGGCT GCTGGCCGTC GCCGCCCGCC TCGCCGCGGC GAAGCCGGCG 
    GCCACTACGG AGGCCGCCGT GTACGGTGGC GTAGGAGGAG GAGGATGCTG 
    CCTCGAGTTC CTCGACTGCG TGCTCCGGGC GATGGGCGTC GCCACCCCGG 
    CCGAGATCAT GCCCCCCGCG GACTTCAGGT GGGCCGCGCG CCCGATGCGG 
    CGGCGCCGCC GCGGGGGCTC CTCGTCCTCC TCCTCCTCGC CGCGCGACCG 
    CGAGCCGAGG GACGGCCGGA TCGCCGCCAA CGGCGCCTCC GCTGCCGCCT 
    CGCTCTACAC GATGCGGGGC AACAAGGGCG TCAACCAGGA CGCCATGCTT 
    GTCTGGGAGA ATTTCTGTTC AAAGGAAGAT ACAATTTTTT GTGGTGTTTT 
    TGATGGCCAT GGACCATATG GCCATTTGGT GTCCAAGAGG GTCAGAGATC 
    TCCTCCCTAT AAAGTTGAGT GCAAATTTAG GAAGAGATGG ACACAAAGAA 
    ACTTCAACTA ACATTGTCAC AAGCAGCATG ACTGAAGGTG GTGGCACCGA 
    ACGCATGGAT AGAGATACTG AAACTCCCCT GGGAACGGAG GAGAATGGAG 
    ACTACCCCGA GATGTTTGCT GCATTAAGAA CTTCATTATT AAGGGCATTT 
    TATGTAATGG ACAGGGATCT TAAGTTTCAT AAAACCATTG ACTCTGTGTT 
    CAGTGGTACT ACAGCAGTCA CAGTGATCAA GCAGGGACAT GATCTCCTGA 
    TTGGAAACTT GGGGGATTCT AGAGCTGTCT TGGGAACT

    Gene models with high sequence identity

    1. AT3G02750.3 [+] show detail - Protein phosphatase 2C family protein
      E-value: 4e-42; Score: 168.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein phosphatase 2C-related 1e-21
    HMMPfam Protein phosphatase 2C, N-terminal 1.1e-06
    HMMPanther PROTEIN PHOSPHATASE 2C DELTA 4e-52
    HMMPanther Protein phosphatase 2C 4e-52
    Gene3D Protein phosphatase 2C-related 1.3e-19

    See the detailed result >

    AT3G02750.3

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G36250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR