K31714

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31714

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31714

Determination of introduced cDNA(s)

  • J013108O10 - Rice Full-length cDNAs - Original: J013108O10

    full reading [+] show sequence

    Nucleotide sequence: J013108O10 - full reading 
    GAAAGTGCAC CGCCGCCGCT ACATCCGAGG GTGCTTCGTG CCTTCGTCTG 
    CTCGCTTCAT CTGCTGGGCG GTGGCTCGGC TGCTCCGGCT CCGGCTCCGG 
    GGAGAATCCG GCGTGAGCGA TTGGGGAGTG GGCCTGCCTC GACGGCGTTG 
    AAGCGGGACC GCCGGGATGT CGCCAGCCGC CACCTCCTCG TCGCCGCCGC 
    CGCGCGAGCG CACAGCACGG CCGGCGGGAG CCGCGCGCGC GGTGGCATGC 
    CCCGTTTCCA TTCCCCGACG CTCCCTTCGT CCAAGGGTGA AGAGGTTCGA 
    ATCCAAGGAG ACGAATTCTG GCACATGACA AGAGTCTTGC GCCTTGGCAT 
    AAATGACAGG GTTGAACTAT TTGATGGCGC GGGTGGTTTG GTTGAAGGAT 
    CTATACAAAA AGTTGACAAA GGCGGTTCAG ATGTGAAGTT GCTTGAGGAT 
    GCTAGACTCA TTGCTCCTGA TGGCATTCAA TGGCATGTTT ATGCTGCATT 
    TGGGACATTG AAAGGTGGAC GTGCAGATTG GCTTGTAGAG AAATGTACTG 
    AGCTTGGAGC TTGTAGTGTT ACACCTCTTC TTACAGAGCG ATGCCATACA 
    ATAGCAGAAA ATAGAGTTGA CAGATTGCAA AGGCTTGTGT TAGCTGCAGT 
    TAAACAATGC CAGAGAATAC ATGGAATGTT GCTGAATCCC CCAATTCAGA 
    TAGCTGACCT TCAGCCTGTT GTATCACAGT CAAAGCTCGC TTTCGTAGCT 
    TCAGCAGAAT CACCTCCTCT TTTAAGCACT TTGCCGAAGT CCTGCAATGA 
    AGAAAGTGGG CTTTTGATTG TTGGACCAGA AGGAGATTTC ACGGAAGAGG 
    AGGTAAACGT TTTGAAAGCA TCAGGCGCTG TTCCTGTAGG TCTTGGTCCA 
    TGCAGACTAC GAGTTGAGAC AGCCACAATT TCACTGCTAT CTGCGCTCAT 
    GCTGTGGTCA GATGCTCATC GCCAGGAAAC ACTGAAATGC AGGTAGTCAA 
    TGTAGAGCTG TCACCCATGT GCTACTTTAT ACTCGCATTA TGTCCAAACC 
    TTTTGAGGTG ATATCCTCTT AAGCAAGACA TTTTAAAGC

    Gene models with high sequence identity

    1. AT1G50000.1 [+] show detail - methyltransferases
      E-value: 1e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.00057
    Gene3D no description 3.1e-31
    HMMTigr Ribosomal RNA small subunit methyltransferase E 3.1e-29
    HMMPfam Ribosomal RNA small subunit methyltransferase E 9.3e-50
    superfamily alpha/beta knot 7.1e-36
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 7.8e-15

    See the detailed result >

    AT1G50000.1

    Model type
    Protein coding
    Short Description
    methyltransferases
    Computational Description
    methyltransferases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosomal RNA small subunit methyltransferase E (InterPro:IPR006700); Has 5958 Blast hits to 5958 proteins in 2191 species: Archae - 0; Bacteria - 4231; Metazoa - 2; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1691 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR