K31727

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31727

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31727

Determination of introduced cDNA(s)

  • J023013M02 - Rice Full-length cDNAs - Original: J023013M02

    full reading [+] show sequence

    Nucleotide sequence: J023013M02 - full reading 
    GGCGTGCTCC TCCTCCTCCT CCTCCGATTC CAATCCAATC CAATCCGATT 
    CAGAAGTAGA GCGAGCGGCG GCTGCGGCGA TGGCGGTGGC GGCGGTGCGG 
    GCGGCGGCGG CGGACGCGGC GGTGACGTTC CTGTGGGTGC TGTGCGTGTC 
    GACGCTGGGG GCGTCGACGG CGGCGGTGAC GTCGTACCTC CGCATCCACG 
    AGGGGATCCA CTACGCGCTC CTCGTCACCG TCTCCCTCCT CTCCGTGCTC 
    CTCTTCGCCT TCAACCTCCT CTGCGACGCC CTCGGCGGCG CCAGCTTCAA 
    CCCCACCGCC CTCGCCGCCT TCCACGCCGC CGGCCTCTCC TCCCCCCGCC 
    ACTCCTCCCT CTTCCCCCTC GCCCTCCGCT TCCCCGCCCA GGCCGCGGGT 
    GCGGTGGGTG GGGCGATGGC GGTCTCGGAG CTGATGCCGG AGCAGTACAA 
    GCACATGCTC GGGGGGCCAT CGCTCAAGGT GGATCTCCAC ACGGGTGCCG 
    CCGCCGAGCT GGTGCTCACC TTCGTCATCA CCTTGGCCGT GCTCTGGATC 
    ATCGTCAAGG GGCCCCGTAA TCCCATCGTC AAGACCTGGA TGCTCTCCAT 
    CTCCACCGTT TGCCTCGTCC TCACCGGCGC TGCCTACACT GGCCCATCCA 
    TGAACCCTGC CAATGCGTTT GGCTGGGCAT ATGTGAACAA TCGCCACAAC 
    ACATGGGAGC AATTCTACGT CTACTGGATA TGCCCTTTTG TTGGCGCTGT 
    TCTTGCTGCC TGGGTCTTCA GGGCCGTGTT CCCACCACCG GCACCTAAAC 
    CTAAGGCCAA GAAAGCATGA GGAAATCAAG CACAAACTTC AACTCAGGAG 
    TTGGTACAGA TGTTGGGTTT GAAGAACCCA ACATTATTTA TTAGCTAGAA 
    TGGTACAAGG AATAATCCTT TCCACCATAT TTAATTCAAA GTAATTTAGG 
    TAATTAGCTT CGGAACACTG ACAAACCCAA GAGCATGCAC ATTAATTTGA 
    TTGGACGACC TGAATGTAAT TTCAATCATT CATTGGTCTT GTTTGCTCTT 
    GAACTGGTGG ATGGTATGAA TGGATATTAT AAATTTATCA GT

    Gene models with high sequence identity

    1. AT3G04090.1 [+] show detail - small and basic intrinsic protein 1A
      E-value: 8e-48; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Major intrinsic protein 2.3e-22
    HMMPanther AQUAPORIN SIP2.1 9.3e-74
    HMMPanther Major intrinsic protein 9.3e-74
    superfamily Major intrinsic protein 5.5e-33
    FPrintScan Major intrinsic protein 7.1e-13
    FPrintScan Major intrinsic protein 7.1e-13
    FPrintScan Major intrinsic protein 7.1e-13
    FPrintScan Major intrinsic protein 7.1e-13
    HMMPfam Major intrinsic protein 5e-19

    See the detailed result >

    AT3G04090.1

    Model type
    Protein coding
    Short Description
    small and basic intrinsic protein 1A
    Curator Summary
    Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER.
    Computational Description
    small and basic intrinsic protein 1A (SIP1A); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: Aquaporin-like superfamily protein (TAIR:AT5G18290.2); Has 2436 Blast hits to 2434 proteins in 334 species: Archae - 16; Bacteria - 100; Metazoa - 613; Fungi - 43; Plants - 1566; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR