K31750

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31750

Determination of introduced cDNA(s)

J033068L17 - Rice Full-length cDNAs - Original: J033068L17

full reading [+] show sequence

GAGACGCACG CGCACACGCA TACGCATCGC AGCCAGTTCA TCCTCGATTC 
CTCCCCCGAA TTTCCTTCGC GATCTCACCC CGCGTGCCCT AGCTAGCTAT 
CGAATCCCGT CACCTCGGCG GCGGCGGCGA GATCGGAGCT CCGGGTTAAC 
CTCCTCCACC GCGAGGCGTG GAACCTCTCT CTCTCTCGCT CTCTCCACCT 
GAGGATCGAA GATCGAAACC CCTGGCACCG GCTCGGGCCG CGGAATGGGC 
GGCCGCGGTG AGTAGCTAGG TCTGCGGCGG CGGAGTTGTT GTTGTTGGTG 
GTGGTGGTGG TGGAGGAGGA GTTGGCGGCG GAGGGGGCGG GGGCGTTGGT 
GGTGGTGGTG GTGGGAGAGT ATCATGGTGC AGTGTCTCGA CGGGGTGAGG 
CAGCTGCTGG CGGTCGTGTT CAAGTGCTGC GACCTCGAGC TGAAGCAGCC 
GCGGGGGCTC GAGGATCCCC AGGTCCTCGC GAGGGAGACC GTCTTCAGCG 
TGAGCGAGGT CGAGGCGCTG TACGAGCTCT TCAAGAAGAT AAGCAGTGCT 
GTGATTGATG ACGGGCTGAT TAACAAGGAG GAGTTTCAGT TGGCGCTGTT 
AAAGACCAGC AAGAAGGAGA GCCTGTTCGC CGACCGTGTA TTTGATTTGT 
TTGACACAAA ACACAATGGA ATTTTAGGAT TTGATGAATT TGCTCGTGCA 
CTCTCAGTAT TTCATCCAAG TGCTCCACTT GATGAGAAGA TTGACTTTTC 
ATTCCAGTTA TATGATCTCA AGCAACAAGG CTATATTGAG AGACAAGAGG 
TTAAGCAGAT GGTTGTTGCT ACACTTGCTG AGTCTGGAAT GAATCTTTCT 
GATGAAATTA TAGAGAGCAT AATCGATAAG ACATTTGAGG AGGCAGACAC 
AAAGCATGAT GGAAGAATTG ATAAAGAAGA GTGGCGCAAT CTGGTTCTTC 
GTCATCCCTC TTTGCTGAAG AACATGACTC TCCAGTACCT CAAGGACATC 
ACCACTACAT TTCCAAGCTT TGTCTTCCAT TCCCAGGTCG ATGACACCTG 
AATTCTTGGA TTTGTTTGAA CTCAAACCAT CAGAAGAATG CTCATGCCGG 
TTCATTAAGA ATTTTGATAT TGGGTTGTTG GATTGGGCAG AGACTCCAGA 
GCTCTGTAGG ATGTTGCATG TTCGATTTGA GAAGTTCTCA AATCTTTAAA 
TTGATGTAAC TTTGTTTCTT TCGTTTGGAA GTTTAGTGTG GCTGGAGACT 
TTCGGGGAGA TGTTAAATTT CTGTCTGAAT CCGTAGATCC TTTATTCTCT 
TCCCCTCTTT TCTGTTTTTC TGGCTAGCAA TCAGAATATC TTTTCTGTTT 
TTTTGGCTAG CAATCAGAAT ATCGGATATA GTTTTGTGAA TCTTTCATTT 
TGCGTACAAA ATAGGAACCT TCAAAAAAAT TGATCGTGCT GGAAAATGTT 
CTGTTGGAGT TTGCAAATTG CAATGATCAT GAAATGCTCT CCTTTTTTGA 
GAGTTTGCAC C

Gene models with high sequence identity

AT4G26570.1 [+] show detail - calcineurin B-like 3
E-value: 2e-108; Score: 390.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Recoverin	1.5e-05
FPrintScan	Recoverin	1.5e-05
FPrintScan	Recoverin	1.5e-05
Gene3D	EF-hand-like domain	9.2e-54
superfamily	EF-hand	1.3e-48
HMMPanther	Calcineurin B protein	5.8e-140
HMMPanther	CALCINEURIN B	5.8e-140
HMMSmart	Calcium-binding EF-hand	2
HMMSmart	Calcium-binding EF-hand	7.7
HMMSmart	Calcium-binding EF-hand	0.83
ProfileScan	EF-HAND 2	11.473
ProfileScan	EF-HAND 2	10.58
ProfileScan	EF-HAND 2	11.445

See the detailed result >

AT4G26570.1

Model type: Protein coding
Short Description: calcineurin B-like 3
Curator Summary: member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins)
Computational Description: calcineurin B-like 3 (CBL3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Calcineurin B protein (InterPro:IPR015757), Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 2 (TAIR:AT5G55990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR