K31823

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31823

Determination of introduced cDNA(s)

J033020E06 - Rice Full-length cDNAs - Original: J033020E06

full reading [+] show sequence

GGGAGCCACC TCAAAAGCCC CCGCCCATCC ACCGCCACGC GGCGATCCAA 
CCCCCTTCCC CTTCGCCGGC GCAGCATCGG ACCTCGCCGC CGCGGCGGTT 
CTTCTGAGCG GGGCCGGGGC GGGGCGGCAG CTGGGGATTC GTCCCGTGCC 
CCGTGCTCTT CCTCTGCGTG GGCCGGGGCG GAGGGAGGGA GGGGAAGTCG 
GTGGTGAGGT GGCGTGTTGT GTGGCGCAGA TGTGAGGGCG GAGGAATGCA 
GAGGTCGCGG AGAGCCCTTC TGAAGAGGAA GGCGGCGGCG GCGGCGAAGG 
AGGAGGAGGA GGAGGCAGGG GTGGGCGTGG CTACCGCGGC GGCCGCCGGG 
AGGAGGCGGC GGCGGCGGCT GTACGGCTTC TCCGTCTCGC TTGTCGTCGC 
CTGCTGGGTC GTCCTGCTCC TGCTCAACCC CCTCGTCGGT CATGGGAACG 
GTCAACGAGA TGAAGGGATT TTTGCGGATG AAGGAAGCTC TGATCCCTCG 
TTTGATTCTG TTGAGCCTAC CTTGAGCGAA GGCTCTGTTG ATTCAGTTGT 
ACAGCAGGAG AATGGGGAAA ATCATGCGTT GCCAGGTGAT AGCTGTGCTA 
AACCCGATGA AAATCATGTG CTTTCTGAAG AGACACTGCT GGAGAAAGAT 
CAGCTTTGCT CCAATGATGA GGCACAGGGT GATAGCATGG ATGCTCTGCC 
CAAGGATAAC GTTGATCAGG GTGAGAATCT TCCACGGACA GATGATGATT 
CTGTAGTTCA TCCAGAGGGG GAGGTGGAGA GCGAAGGTGT TCCAAGACCA 
GCAAGGTTAT CACGAGTTGT CCCTCCTGGT CTTGATGAAT TCAAGACACG 
AGCGATTGCG GAAAGAGGAA AGGGTGTCCC TAGTGGTCAA CCTGGAAATG 
TGATCCACAG AAGGGAGCCT AGTGGGAAGT TGTACAATTA TGCCTCGGCA 
GCTAAAGGGG CTAAGGTCCT GGAATTCAAC AAGGAGGCCA AGGGTGCTTC 
TAACATCCTA GACAAGGATA AAGACAAGTA TCTCCGCGAT CCTTGCTCAG 
CAGAGGGGAA GTTTGTCATT ATAGAGCTGT CTGAAGAAAC CTTGGTAGAT 
ACAATCGCAA TTGCAAATTT TGAGCACTAT TCTTCTAACT TGAAAGAATT 
TGAAATGCTG AGCAGTCTGA ATTATCCCAC AGATAGCTGG GAAACACTCG 
GGAGATTCAC TGTTGCAAAT GCCAAGATTG CTCAGAATTT TACTTTTCCT 
GAGCCAAAGT GGGCTAGATA TCTGAAACTC AACTTGCTTA GCCATTATGG 
TTCCGAATTC TACTGCACGC TCAGTATGCT TGAAGTGTAT GGAATGGATG 
CGGTGGAAAA GATGCTGGAG AACTTGATTC CAGTTGAGAA TAAAAGGCTG 
GAACCTGATG ACAAAATGAA GGAACCTGTC GATCAGTAAA CACAATTGAA 
GGAGCCCACT GAGGGAAAAG AATCCTCACA TGAACCCCTG GATGAAGATG 
AGTTTGAACT AGAAGATGAT AAACTAAACG GTGATTCATC AAAGAATGGT 
GCTCATGATC AAGTTACCGA GACAAGGCCA ATTCAGGCTG GCAGGATTCC 
TGGAGATACA GTTCTTAAGG TACTAATGCA GAAGGTGCAA TCTCTTGATG 
TGAGCTTTTC TGTCTTGGAG CGGTATCTAG AAGAACTAAA TAGCAGATAT 
GGGCAAATTT TTAAGGATTT TGATGCTGAT ATTGATACCA AAGATGCACT 
CTTGGAGAAA ATCAAATTGG AGCTGAAGCA TCTTGAGAGA AGCAAAGATG 
ACTTTGCGAA AGAAATTGAA GGGATTCTCT CATGGAAACT AGTTGCTTCC 
TCACAGTTAA ACCAGCTACT CTTGGATAAT GTCATAATCA GATCAGAACT 
TGAAAGATTT CGGGAAAAGC AGGCTGACTT GGAGAATAGA AGCTTTGCTG 
TAATATTCCT GAGTTTTGTT TTTGGATGTT TAGCGATTGC TAAGCTGTCT 
ATAGGCATGA TATTTAATAC CTGTAGATTA TATAATTTTG AAAAATTCGA 
TAGGGTAAAA TCTGGATGGC TTGTGTTGCT GTTCAGCAGT TGCATTATAG 
CCTCCATTTT GATAATACAG TGATGTACCT ATCAACTCCA TATAATTGCG 
GCTGCGCTTT GTAATTGCCT GAGGTGTCTA ATTCAAAATC TATTACAATG 
CG

Gene models with high sequence identity

AT1G71360.1 [+] show detail - Galactose-binding protein
E-value: 2e-104; Score: 377.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Galactose-binding domain-like	4.4e-21
HMMPfam	Sad1/UNC-like, C-terminal	3.7e-38
HMMPanther	MEMBRANE PROTEIN CH1 RELATED	1.5e-53
Coil	coiled-coil	0
Coil	coiled-coil	0
Gene3D	no description	8.8e-05

See the detailed result >

AT1G71360.1

Model type: Protein coding
Short Description: Galactose-binding protein
Computational Description: Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G22882.1); Has 1743 Blast hits to 1314 proteins in 210 species: Archae - 22; Bacteria - 165; Metazoa - 539; Fungi - 114; Plants - 96; Viruses - 20; Other Eukaryotes - 787 (source: NCBI BLink).
Link: InterPro Scan - TAIR