K31834

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31834

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31834

Determination of introduced cDNA(s)

  • J023088M17 - Rice Full-length cDNAs - Original: J023088M17

    full reading [+] show sequence

    Nucleotide sequence: J023088M17 - full reading 
    GAGTGTGGTC AGTAGAGAGG AGGAAAAGCC TCTTGTCGTC TCTTTGACCC 
    AACGACCCCG CCATTGCTCA CCTCCACCTC CACCTCACCT CCTCCTCCTC 
    CTCATCCCCT CGCCGGAGCG GCCACGCCGC CGGGAGGGAG GGAGCTCGCC 
    GCAGCCGCAG CCGCAGCCGC AACCAGCCAG CTACTGCGTG CTGCAACCTG 
    GGATTTTCTT TTTTCTTTTT TTTCTTGTGG ATTTGATCTG AAGTGGAGGT 
    GGGAGGAGGA GGATGGAGAG CTACCTGGAG GAGAATTTCG GCGGGGTGAA 
    GGCGAAGAAC TCGTCGGAGG AGGCGCTCCG GCGGTGGCGC AAGCTCTGCG 
    GCGTCGTCAA GAACCCCAAG CGCCGCTTCC GCTTCACCGC CAACCTCGAC 
    AAGCGCGGCG AGGCCCAGGC CATCAAGCAC GCCAACCACG AGAAACTGCG 
    GGTTGCGGTG CTGGTATCGA AAGCTGCACT ACAGTTTATA CAGGGTCTTT 
    CACTTCGAAG TGAGTATGTT GTTCCTGAAG AAGTCAAGGC TGCAGGGTTT 
    CAGATTTGCG CTGATGAACT GGGCTCTATT GTTGAGGGTC ATGATAGTAA 
    AAAGTTGATC ACCCACGGTG GAGTTACTGG AATAGCAGAC AAGCTTGCGA 
    CATCACCAGC GGATGGGTTA AGTACAGCTG AGGAAAGCAT TAAGCGCAGG 
    CAAGATGTAT ATGGACTAAA CAAATTCACA GAAAGCGAGG TCCGGAGTTT 
    TTGGGTGTTT GTATGGGAAG CACTTCAAGA TACAACTCTT ATAATTCTTG 
    CTGTCTGTGC CTTTGTATCG TTGGTTGTTG GCATTGCCAT GGAAGGATGG 
    CCAAAAGGTG CTCATGATGG TCTGGGAATT GTTGCAAGTA TCCTCTTGGT 
    CGTGTTTGTT ACCGCAACAA GTGACTATCG GCAATCCTTA CAGTTCAAGG 
    ACTTGGACAA GGAGAAAAAG AAAATACAAG TGCAAGTCAC AAGGAATGGT 
    TTTAGACAAA GGCTATCAAT ATATGATCTT CTTCCTGGAG ATGTTGTCCA 
    TTTAGCAATT GGTGATCAGG TTCCTGCTGA TGGGCTATTC ATTTCTGGGT 
    TTTCTCTACT GATTAATGAG TCCAGTCTCA CTGGCGAGAG TGAACCTGTT 
    GTTGTAAATG AAGATAATCC TTTTCTTTTG TCGGGGACCA AAGTTCAAGA 
    TGGTTCCTGC AAGATGCTGA TTACAACAGT TGGCATGCGA ACCCAATGGG 
    GAAAACTAAT GGCTACTCTC AGTGAAGGTG GCGATGATGA AACCCCACTA 
    CAGGTCAAGC TTAATGGTGT TGCAACTATT ATAGGCAAGA TTGGTCTATT 
    TTTCGCAGTC ATAACTTTCA TTGTCCTTTC TCAAGGGTTA ATCAGCAAGA 
    AGTACCATGA GGGGCTGCTT TTAAGCTGGT CAGGAGACGA TGCACTGGAA 
    ATGTTAGAGC ATTTTGCTAT TGCAGTTACC ATTGTTGTTG TTGCTGTTCC 
    TGAGGGGTTA CCCTTAGCAG TTACTTTGAG TCTGGCATTC GCAATGAAGA 
    AAATGATGAA TGACAAGGCA TTGGTTCGTC ACTTAGCCGC ATGTGAAACA 
    ATGGGCTCAG CTACGACCAT CTGCAGTGAC AAGACAGGAA CACTGACGAC 
    CAATCATATG ACTGTTGTCA AGGCCTGCAT TTGTGGAAAC ATAAAGGAAG 
    TTAACAATCC TAAGAATGCA TCTGATTTGT GTTCTGAGCT TCCAGAAACT 
    GTTGTCAAAA CCCTTCTGGA GTCTATTTTT AACAATACTG GTGGTGAGGT 
    TGTGATTGAC CAAGATGGGA AATATCAGAT TCTAGGTACC CCAACAGAGA 
    CAGCTTTGTT GGAATTTGCA TTGTCACTTG GTGGAAATTT TAAGGCAAAG 
    CGTGATGAAA CTAAGATTGT GAAAATGGAA CCCTTTAATT CAACAAAAAA 
    GAGGATGTGT GTTGTTCTTA AGCTTCCTGG AGGAGGATGC CGTGCACATT 
    GTAAAGGTGC TTCAGAAATA GTGTTGGCTG CCTGCGATAA GTTTATGGAC 
    GAGACAGGTG CTGTTGTCCC CCTTGATAAA ACAACTGCTG ACAAGCTTAA 
    TGGGATTATT GAAAGCTTTG CTAATGAAGC TCTTAGGACA TTGTGCCTTG 
    GTTATCGGGA AATGGAAGAA GGCTTTTCTG TTGAAGAACA AATACCACTG 
    CAAGGGTATA CATGCATTGG GATTGTAGGT ATTAAAGATC CTGTTCGCCC 
    AGGCGTGAGG GAGTCTGTTG CAACCTGCCG ATCTGCTGGA ATTATGGTGA 
    GAATGGCCAC TGGTGACAAC ATAAATACAG CAAAAGCGAT CGCTCGTGAA 
    TGTGGCATAC TTACTGAAGA TGGCCTGGCT ATTGAGGGAC CGGAGTTCAG 
    AGAGAAAAGT CTTGATGAAC TACTCAAGTT GATTCCGAAA ATTCAGGTAA 
    TGGCCCGATC ATCACCACTT GACAAGCATA CACTTGTAAA GCATTTGCGC 
    ACAACATTCA ATGAAGTTGT TGCTGTAACT GGTGATGGCA CAAATGATGC 
    GCCTGCGCTT CATGAAGCAG ATATTGGACT TGCAATGGGC ATTGCTGGGA 
    CTGAGGTGGC GAAAGAGAGT GCCGATGTCA TAATTCTGGA CGACAACTTC 
    TCCACAATTG TTACTGTTGC CAAATGGGGA CGCTCTGTTT ACGTCAACAT 
    TCAAAAGTTT GTGCAGTTTC AGCTGACTGT TAACGTTGTG GCTTTACTTG 
    TCAACTTCTC TTCAGCTTGC TTTACAGGAA ATGCACCTCT GACAGCTGTT 
    CAACTTCTTT GGGTGAACAT GATCATGGAC ACCCTTGGCG CCCTTGCATT 
    AGCTACCGAG CCACCTAACG ATGACTTAAT GAAGAGAGAG CCAGTGGGCA 
    GAACAGGGAA ATTTATCACA AATGTTATGT GGAGGAACAT TCTGGGGCAG 
    TCTTTCTACC AATTC

    Gene models with high sequence identity

    1. AT4G37640.1 [+] show detail - calcium ATPase 2
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ATPase, P-type, ATPase-associated domain 4.4e-62
    HMMPfam CaATP_NAI 5.5e-21
    HMMPfam ATPase, P-type cation-transporter, C-terminal 4.9e-20
    HMMPfam Haloacid dehalogenase-like hydrolase 1.2e-16
    HMMPfam ATPase, P-type cation-transporter, N-terminal 3.5e-14
    PatternScan ATPase, P-type phosphorylation site 0
    HMMPanther CATION-TRANSPORTING ATPASE PLANT 0
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 0
    superfamily Calcium ATPase, transmembrane domain M 7.9e-90
    superfamily Metal cation-transporting ATPase, ATP-binding 2.8e-53
    superfamily HAD-like 2.2e-46
    superfamily Calcium ATPase, transduction domain A 1.2e-25
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 4.4e-36
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 4.4e-36
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 4.4e-36
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 4.4e-36
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 4.4e-36
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 4.4e-36
    FPrintScan ATPase, P-type, H+ transporting proton pump 1.5e-12
    FPrintScan ATPase, P-type, H+ transporting proton pump 1.5e-12
    FPrintScan ATPase, P-type, H+ transporting proton pump 1.5e-12
    HMMTigr ATPase, P-type, calcium-transporting, PMCA-type 0
    HMMTigr ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.6e-23
    HMMTigr ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 1.7e-17
    HMMTigr ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 5.3e-29
    Gene3D no description 1.2e-25
    Gene3D no description 1.1e-42
    Gene3D no description 4.8e-61
    HMMSmart ATPase, P-type cation-transporter, N-terminal 0.00025

    See the detailed result >

    AT4G37640.1

    Model type
    Protein coding
    Short Description
    calcium ATPase 2
    Curator Summary
    Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor.
    Computational Description
    calcium ATPase 2 (ACA2); FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding, calcium ion transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: Cation transporter/ E1-E2 ATPase family protein (TAIR:AT2G22950.1); Has 47430 Blast hits to 34684 proteins in 3201 species: Archae - 904; Bacteria - 32793; Metazoa - 4036; Fungi - 2849; Plants - 2078; Viruses - 3; Other Eukaryotes - 4767 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR