K31842

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31842

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31842

Determination of introduced cDNA(s)

  • J013000K22 - Rice Full-length cDNAs - Original: J013000K22

    full reading [+] show sequence

    Nucleotide sequence: J013000K22 - full reading 
    GGCGTCTTCC CGTCCAAAGC CAAGAAACCA AAGCTGCAAG TAGCCAGCCA 
    GAGGAAGAAG AAGAAGAAGC TAGCTAGCTT CTCGGGAAGG AGGAGGGAAC 
    GGAGATCGGA GGCGGAGGCT CCAAGAAAGC AGCAAGAAAG TGCGAAAATC 
    TGAGGAGGAA GGAGAAGGGA GGTTGAATCG ATCGATCGAT GGCTCGGCGG 
    CCGGCGCCGT GGGAGCAGGG CGGCGACGAG TACGACTACC TGTTCAAGAT 
    CGTGCTGATC GGGGACTCCG GCGTGGGGAA GTCGAACCTC CTCTCCCGCT 
    TCACCCGCAA CAGCTTCTCC CTCGACTCCA AGTCCACCAT CGGCGTCGAG 
    TTCGCCACCC GCACCATCCA GGTTGAAGGA AAGATTGTAA AGGCACAGAT 
    ATGGGACACA GCCGGGCAAG AACGGTACCG GGCCATCACA AGCGCATACT 
    ACCGCGGCGC AGTGGGAGCA TTGCTAGTCT ATGATGTCAC AAAGGCCACA 
    ACTTTTGAGA ATGTGAAGAG GTGGCTCAAG GAGCTCCGTG ACCATGCCGA 
    CTCCAACATC GTCGTCATGC TCATCGGCAA CAAGATCGAC CTCAAGCATC 
    TCCGGTCAGT GTCCTTGGAG GACGCAACAA GCTTTGCAGA GAGGGAGGGC 
    CTATCCTTCG TCGAGACCTC GGCGCTCGAC GCGACGAATG TGGATAAAGC 
    TTTTCAGACA GTGCTCACTG AGATCTACCG GATCATCAGC AAGAAGGCAT 
    TGGCTGCAGA TGAGGCTGGA GCTGGTGCTG GTGCTGTCAG AGAGGGCCAA 
    TCTATCCAAG TCTCCGCGAC AGATTCCAGC AGTTTTACAT CAAGATGTTG 
    CTCTTTCTAG TGGCCATCGA TATCGTTTCA ATTGGATTGC TTGAGGTGAT 
    CCTATTTGTA ATTGTCAAAA TGTGGTGTCA TGCAACAAGA ATAAAGGATT 
    ACATTCAGGA GATGAAGATT TTTCATTCTG TACATAAGAG TAACATAGTA 
    CAGCCGCTTC GACAATTTGG ATCTGAATAT CATAAACTCG TGCTATGCAT 
    GGGTGATGCA GTTGCTGTTA TACTATTGCC AAAATTGAAA TATTTTGTCC 
    TACTACTGTG AAACTGTGGT ACAACATAAA GTAAGTCTTG CTATGT

    Gene models with high sequence identity

    1. AT1G09630.1 [+] show detail - RAB GTPase 11C
      E-value: 4e-85; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5.4e-64
    ProfileScan Small GTPase 36.335
    HMMTigr Small GTP-binding protein 2.3e-41
    HMMSmart Ras small GTPase, Ras type 1.9e-26
    HMMSmart Ras small GTPase, Rab type 1.1e-110
    HMMSmart Small GTPase, Rho type 1.7e-11
    HMMSmart Ran GTPase 1.5e-06
    HMMPanther Rab11-related 4e-92
    HMMPanther RAS-RELATED GTPASE 4e-92
    superfamily P-loop containing nucleoside triphosphate hyd 3.7e-64
    HMMPfam Ras 1.2e-61
    FPrintScan Ras GTPase 3.2e-42
    FPrintScan Ras GTPase 3.2e-42
    FPrintScan Ras GTPase 3.2e-42
    FPrintScan Ras GTPase 3.2e-42
    FPrintScan Ras GTPase 3.2e-42

    See the detailed result >

    AT1G09630.1

    Model type
    Protein coding
    Short Description
    RAB GTPase 11C
    Curator Summary
    Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.
    Computational Description
    RAB GTPase 11C (RAB11c); FUNCTIONS IN: GTP binding; INVOLVED IN: cytokinesis; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2B (TAIR:AT1G07410.1); Has 27576 Blast hits to 27520 proteins in 758 species: Archae - 26; Bacteria - 154; Metazoa - 14618; Fungi - 3770; Plants - 3044; Viruses - 20; Other Eukaryotes - 5944 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR