K31913

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31913

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31913

Determination of introduced cDNA(s)

  • J033031O16 - Rice Full-length cDNAs - Original: J033031O16

    full reading [+] show sequence

    Nucleotide sequence: J033031O16 - full reading 
    GGTTTTGTTG TTCGCCTCCG CTCGCCGCGC CTGCAGATCC CCCTCTCGCC 
    TCCTCTCCTC TCCTCCCCAA ACCCTAGCGA GCGACCAACT CCTGGGTGGG 
    GGGATTTTTC TCCATGGCGC TGCAGTTCGT CGAGTCGCAG CGCGAGGCGC 
    GGCCGGAGCT CGCCGACCCG TACGCCGACC TCGCCGACCT CTACCAGCGG 
    AAGCTCTGGC ACCAGCTCAC CCTCAAGCTC GACCACTTCC TCCAGCTCCC 
    TGCCGCGCAG ACGGGTGACA CCCTCATACA GCTCTACAAC AATTTCATCA 
    CTGATTTCGA GACGAAGATC AATCTTCTCA AACTTGCGCA TTTCGCGGTC 
    ATCGCTTCGC GCCAGTACCC CGACAAGGAT GCTGCTATAA GTTTCCTCGA 
    GGGGGTAATC ACAAAATTGC GCGAGACAAA GGACCTGCGC ATCAATGAAC 
    CCATTCTCTA CGTCAAGATG CAAATCGCTG CGATTAACCT GGAGAAGGGA 
    AATCAGAAGG AGTGCAAGAA ACTTTTGGAC GAAGGAAAAT CTACTCTAGA 
    TAGCATGACT GATGTTGATC CCACAGTTCA TGCTAGCCTC TACTGGATAT 
    CATCTCAGTG CCATAAGGCT CGCCAAGAAT TTGCTGAGTT CTACAAGAAT 
    GCCCTTCTGT ATCTGGCTTA CACTACTGTA GAGTCACTCT CTGAGTCTTT 
    CAAACTGGAT TTGGCATTTG ATCTCTCCCT TGCAGCCTTG CTTGGTGATA 
    ACATCTACAA CTTTGGGGAA TTGTTAGCTC GCCCGATTAT CAACAGTCTT 
    ATTGGAACCA AGGTGGAGTG GGTCTATCAT ATGTTACAAG CATTCAACAC 
    CGGCAACCTA GCTCTCTACC AAGAACTATG TAGGGTCCAC AATGCTGCTC 
    TCAGTGCTCA GCCAGCTTTG GTGCAGAATG AACGGAAACT GCTAGAGAAG 
    ATCAACATTC TATGTCTGAT GGAGATAATC TTTAGCCGGG CGTCAGAAGA 
    CAGAACTATC CCATTAAGTG TTATAGCCGA GCGCACTAAG CTTTCTATCA 
    GTGATGTGGA ATATCTTCTT ATGAAGAGCC TCTCGGTTCA TCTTATAGAG 
    GGGATAATTG ATGAGGTGGA CAGCACAGTT CACGTGTCAT GGGTCCAGCC 
    TAGAGTACTT GGAATTCAAC AGGTGAAGGC GTTGCGCGAG CGGTTGGACG 
    CCTGGGTTGG AAAAGTGCAT ACCACCCTGT TGTCCGTTGA GGCAGAGACG 
    CCTGATCTTG TAGCTGCATA ACTTATCCAA CCTTCCTTTT GCTATATGGC 
    CTTGGTCACC AAGGGTGCGG TGCGAAAAGA GAGATGATCT GGCTGTGGTG 
    GCTGTAGTTT TCTGGGTGAT GAAAACATGT TGCCTTGAAC GTTTCCCTGG 
    CACCCTATTG ATCAGGACCT GTAATTTCAT TTCTCTTTAA ATCCTCTGGA 
    CGTTGAGGCC TGGAGCTTGA TGCATTGATC ACGGAAAAAG CACAAGCGGA 
    TCAAAAGTTT CATACCAGTA GGGTGTCATT GTAGTTCTTT TCCCAGTGTG 
    ATTTAGATTG TTACTCAGCG GGTATTTTC

    Gene models with high sequence identity

    1. AT4G19006.1 [+] show detail - Proteasome component (PCI) domain protein
      E-value: 2e-163; Score: 572.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Proteasome component (PCI) domain 1.2e-10
    HMMPfam Proteasome component (PCI) domain 2.5e-10
    HMMPanther 26S PROTEASOME SUBUNIT 3.7e-134

    See the detailed result >

    AT4G19006.1

    Model type
    Protein coding
    Short Description
    Proteasome component (PCI) domain protein
    Computational Description
    Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT5G45620.1); Has 1087 Blast hits to 1083 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 564; Fungi - 232; Plants - 168; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR