K31914

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31914

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31914

Determination of introduced cDNA(s)

  • J023054M12 - Rice Full-length cDNAs - Original: J023054M12

    full reading [+] show sequence

    Nucleotide sequence: J023054M12 - full reading 
    GACATCGCAA TCCCAGCTCC CTTCTTCCCA CCGATTCCAA TCTCCAGAAT 
    TCTGCTTCGA TATGGCCGCC AAGATCTACA TAGTGTACTA CTCCATGTAT 
    GGCCATGTTG CAAAGCTAGC AGAGGAGATC GAGAAAGGTG CTTCTTCAGT 
    TGAAGGAGTT GAGGTCAAGC TATGGCAGGT CCCAGAGACT CTTTCTGATG 
    ATGTGCTCAC CAAGATGGGT GCTCCTTCAA AGAAAGATGT TCCCATAATC 
    ACACCCGCAG AGCTTGCCGA GGCTGATGGT GTCATCTTTG GGTTCCCAAC 
    TAGATTTGGA ATGATGGCTG CTCAATTCAA AGCATTCATG GATGCTACCG 
    GTGGGCTGTG GAGGACACAG CAGCTCGCAG GCAAGCCCGC GGGAATTTTC 
    TACTCTACTG GTTCCCAGGG TGGTGGCCAA GAAACTACTC CGTTGACAGC 
    AATTACTCAG CTAGTGCATC ATGGCATGAT CTTTGTTCCA GTAGGGTACA 
    CCTTTGGTGC TGGGATGTTT GAGATGGAGC AAGTGAAGGG CGGAAGCCCG 
    TACGGGTCTG GCACATTCGC TGGTGATGGA TCAAGGGTTG CCACTGAGCT 
    TGAGCTGCAA CAAGCCTTCC ACCAAGGGAA GTACTTTGCT GGAATTGCGA 
    AGAAACTCAA GGGTTCCGCA TGATCACCTA GACAATGTTT GAGTCTGATC 
    ATCCATATGG AATAAAGTTT CAGCTCTAAA GTTGATAGTT TGTTATTTTA 
    CCTCAGAGTG CCATTGGAAT GTAATTTGGG TTGTTGCCCA ATACTTTGCC 
    ATGATATATG TGATCCCATA CCTTTTCCTG CTTT

    Gene models with high sequence identity

    1. AT4G27270.1 [+] show detail - Quinone reductase family protein
      E-value: 6e-90; Score: 327.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Flavoproteins 3.2e-47
    HMMPfam NADPH-dependent FMN reductase 4.6e-14
    ProfileScan Flavodoxin/nitric oxide synthase 20.894
    HMMTigr Flavoprotein WrbA 3.7e-72
    Gene3D no description 1.8e-69

    See the detailed result >

    AT4G27270.1

    Model type
    Protein coding
    Short Description
    Quinone reductase family protein
    Computational Description
    Quinone reductase family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: negative regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), NADPH-dependent FMN reductase (InterPro:IPR005025), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: flavodoxin-like quinone reductase 1 (TAIR:AT5G54500.1); Has 3487 Blast hits to 3484 proteins in 1099 species: Archae - 83; Bacteria - 2629; Metazoa - 2; Fungi - 274; Plants - 205; Viruses - 1; Other Eukaryotes - 293 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR