K31916

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31916

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31916

Determination of introduced cDNA(s)

  • J033060L17 - Rice Full-length cDNAs - Original: J033060L17

    full reading [+] show sequence

    Nucleotide sequence: J033060L17 - full reading 
    GAGTGCTGCT CCTGCTCCTC GTGGTCGAGA AGGAATAATT AGGGCTCCTC 
    TGTCTTTGCT TTAACGCCAC TCCTCTCTCT TTTTCTTCTT CTTCTTCCTC 
    AGAATAAATT CTCTCTCCAC TGCCGCAAGG AAAGGCGCCT CACCGTCACC 
    GGGGTGTGCC GGAAAGCTCC CATCTTTGTC TCCATTTGTT GCTTGCCCTC 
    AATTCCTTCC TTCTTTCCTC CCTCTGGGTT CTTGTCCCCG GAGGCCCGGT 
    TTCATCTCTC CTCGATGTGA TGCGTGTGAC TCCCAGGCAG GTGATTGGAG 
    CTCACGTCGC GGCGGTGATT TGCACTGTCC TCGGGGTCTG AATTGCTAAT 
    TACTACTGAG CGTCTCTCTC GCATGAGGAA TAATTCGAGA ATCGACGAAA 
    GCTCCAACAT TTGGGTGAAT TTGGTCGCTG CCCCGTTCAA TTTCGCCCTC 
    GCGGCCCTGG AATTCGCGAT GTGGAGCTCC TTCTGGTGCT TCATGGCCAT 
    CCTCTCCGCC AATTTCTGAG CCAAATCTCG TGCGATTCCG AGGCCCCCCC 
    ACGAATCTGT GGGGTCGTCG GAGCGATAGG TCACTGGCAC CATCACCACC 
    ACCACCATAG TGGTTGTGGC AAAAAGGAAC AAGGCACCTT CTTGGAGTTG 
    GGATTAGGTG CAGTCTCGAG CTCAAAAGGG CTCGTTTGGT GGAAACCTTT 
    TTGGTTTTGG TTGCCTGTCA GTGTGCTCAG CTTCTTGCTG ACCCATCTAG 
    CTGAATGGAG ATTGCTCAAA TTGGGGATTG CTCAGCTTTC TAACTGAGTC 
    AGAGAGTGTC GTCTTGATTT GATTTGATTT GATTGGATTT CACCAATTGG 
    ATTGGGATTT CAGCAATGGA GGAGAGGTTA GCCGACGTGG AGGGCAGTTT 
    CGCCTGCAAT TCGAGAGGGG AGGATGACTT CAGGAGCTGC TGTGGGGATG 
    AGGATGAGTG GGAGGACACC GAGGAGTCAT TCACGGCCGG CGTCGCCAAG 
    GGAGAGCTTG ATGAGAGCTC GGTGAGGCTG TTCTTCAAGG GCGTGTCGAG 
    CCCCGAGGCG GAGGGGAAGA AGCTGTCCGG GATTGGGGTG GTGATGGAGA 
    GGTCACCTGG GGTGCCTATG CTTCAGGTGC AGAAGAAACT GGACTTCTAT 
    GTGGATGAGC TAGTGGCCGA TCACTTGGCG CTGATGGATG GCCTGTTGGT 
    GGCGTTGCAG AATGGGATAC GGAAGATCTT TGCTTTCACC AATTCGGAGA 
    AGCTGTACTT TCAGATCGCA GAAGCTGAAA TTCTAGAAGA CCAGCTCTTG 
    GTAGCTTTAG GACACAGAAT TCTTGAACTG GTGGAAAAGC TGGAAGACTT 
    TGATATAATA TTGCTTCCTA GCTTTGAGCT TGAGAGGCCA CTGCAGTTGG 
    CCAAAGAAGC CATAGGCATC ATGTATCTAT CTCCATACGA GGTTGGCACC 
    TGTTCAATTT GCTGTGAGGA AAAACGAGGC GCTCAGATGA TCAAAGTGGG 
    TTGTGCTCAT ACATTTTGCT ATAGCTGCTT GACTTCATAT ACTCAAGAGA 
    AGCTGCAAAC CAACAAGGTT CCTATAAGAT GCCCACAGTT AAGGTGTAAA 
    TATCATATTT CTGCTAGTGA GTGTAAGTCA TTCCTTCCAG TTAGCTGCTA 
    CGATTCTCTG GAGAGAGCTT TTGCAGAAGC TGGCACCTCA GACATGGAAA 
    GATTTTATTG TCCCTTTCCA AACTGTTCAG TTCTACTAGA TCTTAGTCAG 
    CACTTCTCTA GAGCAAGTAC ATCAAGTCAG TCAGATCTCA ATTGTGTTGA 
    GTGCCCAGAA TGCCATAGAG ATATCTGTAT CAACTGTGGA GTGCCATGGC 
    ATGTCATGAT GGGCTGTGAT GAGTACCAGA GCTTGCCTGT TGATGAAAGA 
    GATGCAGGAG ACCTGTCTTT GCATCGGCTA GCACAAAACA ATAGGTGGAG 
    GCGTTGTCAG AGATGCCGAC GAATGATTGA ACTCACACAA GGCTGCTTCC 
    ATATGAATTG CTGGTGCGGG CACGAGTTCT GCTACTCCTG TGGCGCCGAG 
    TACACCAATG GTATACAGAC ATGCCAATGT GTTTTCTGGG ACGAAGAGAG 
    CATCGAGGCT GCCTCGGCAG CGCATTCCAC CCAAGCATCC GAGATATGGG 
    CATGGGACAC GTTCGACTGC ATGCCAACCG CCATCGAAGG GTACTCGGAG 
    CAGGAGAGAG CTCAGCTGGC TCTCATTCAG AGGTTCCTCT CAGGGGGTTT 
    CAACCTGGGT GAGCCTCCAA GCCAGTCGCC GCCCCGCTGC GCCGATTCAT 
    ATATCATTGA CACCATGAAG GACCTTCACC AGCTGCCATG GCTCGAGCGG 
    TTCGTTTCGG TGATCAGTGA CAGCTACAAT GAAGATTACA TCCAGTGAAA 
    ACAACATAGA TAGCATTAAG AAAAAAAGAA TGGCACATAC TGATGAATTT 
    CATTTGGAAT AATATGTTTC CATGCCCCTC TTGAAAATCA ATACAGGAAA 
    AGTGAGATGG TTCTATACCT TCATGAGCTT TTCCTCTTGT ACTCCCTTTT 
    TTCCTGGTTT GGTGCATAAG CAAAAGGAGT TGCCATCACT GATTTTATTT 
    ATTTTTTGTT AATTCCCTAA GCGTGTATAT GCTTGTTTTT CTTGTGAGCC 
    ACACATGCTT GGGATGGTTT CAGAACTTCT TGATGTTGAA TTGGATAAGC 
    TACATCAGCA ATTGTTCAGT TGATGCGTGT ATCTTTACC

    Gene models with high sequence identity

    1. AT4G19670.2 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-136; Score: 483.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 11.058
    PatternScan Zinc finger, RING-type, conserved site 0
    superfamily RING/U-box 3.1e-09
    superfamily RING/U-box 1e-08
    HMMSmart Zinc finger, RING-type 0.0015
    HMMSmart Zinc finger, C6HC-type 2.9e-05
    HMMSmart Zinc finger, C6HC-type 0.43
    HMMPanther ARIADNE RING ZINC FINGER 4.5e-21
    HMMPfam Zinc finger, C6HC-type 8.2e-08
    HMMPfam Zinc finger, C6HC-type 7.2e-06

    See the detailed result >

    AT4G19670.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 3330 Blast hits to 3305 proteins in 225 species: Archae - 1; Bacteria - 6; Metazoa - 1257; Fungi - 660; Plants - 920; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR