K31917

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31917

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31917

Determination of introduced cDNA(s)

  • J023075K06 - Rice Full-length cDNAs - Original: J023075K06

    full reading [+] show sequence

    Nucleotide sequence: J023075K06 - full reading 
    GTATGTTTGC GGTTGCACCA TGTTTTGGTG TTCTTGGTTA ACATCAAATA 
    GCATAGCCAG CTGATTCATC CATGCGCAAC TTTGACAAAA TGCACTTTTT 
    TTTCAAATCT CTGTTAGCCT TTTTTTTTTT TCCAATAGAC GTGCTGCCTC 
    ACCTATTTCT CATTGTTCTG TTCACCCTTT TTGTTATAGC TGTGTTTCCA 
    TCACTAAATC CTCGCTTTGT TAAATTAGAC GACACTCGTT TCGTGTTTCA 
    CCACTTCAAC AGAGTTGATG ACTTGCAAAA GCCCATTGAA AACCCAGAAA 
    ACATAAACTG GGAGAGCTAT GCAAGAGGTG CTGTTTATGC CCTGCAAAAT 
    TTTGGATATG ATCTCAAGAA GGGTATTATA GGATATATTT CTGGTGTGAA 
    AGGACTTGAC AGTTCAGGGC TCAGTTCATC TGCAGCAGTA AGCTAACTGA 
    TATGTCATGT ATATTTGAGT TAAAATTGCT GGCACAATCA TCTGTAATAT 
    GTAGAAAACT GGAAATATGA GTTTAGTGCC AACCTAGTTG TGAATCGAAT 
    ATGCAGTATT TCATAATCAT GACATATACT TGGCTCACAT TTGACTTGGA 
    GTTCAAAGCA AATTTGTGAA GCTACTAACT TTGTACTAGT ATCTTCTAAA 
    CCTTCAGCTC ACCATAACAA GGACAGAAAC TTCCAGTTCT TACTCTAGGT 
    TCTCAAAAGA ATTATTAATA TAATTGATAC TTTGGTTAGT TATGTGATCA 
    TCAAATGCCT ATTTCTGTAT GCTCCTCATC AGGTCGGGAT TGCCTATTTG 
    ATGGCTTTAG AAAATGTGAA TGATCTGGTT GTATCACCAG TGGACAACAT 
    TCAGTTGGAC AAGTGAGTTT GTTTCCTTTT AGTAAGCATT CCATGTGGAC 
    TAACATTATG AATTCATACA TGGGATCCAG AACAGTTCTA ATTTCAAGTA 
    TCTATGTTGA AGTCCCCACA ACTATCTACT ATTGCCATGT TCTAAAGCAA 
    CAATCAAATA TTGCTACATA AGATTTATTA GCTCATTGAG TCATGGTCAC 
    TAGCAGAGTT CTTAATTTCA TATCCCTATT TGTCAGGTCC ATCGAAAATA 
    AATATTTGGG TCTTGAAAAT GGTATTCTGG ATCCATCAGC TATTTTGCTC 
    TCACGGTATG GCTATCTCAC CTTCATGGAC TGCAAGGTAG TACTTTCCCT 
    TGTATTTTCT GAAAGTCTAC TATTTTAGTA ATATATTCAG TATGACTTCT 
    GTTTTTTCAA AGTTTTGAGA CTGGTATATC ATTTTTTCTG TAAAAAAGGC 
    TTTTTTTTAT TCACACAAGT TCATTTTTTA TGATATTGCA TTGGGTCCAT 
    ATAATTATTT CAATCCTTCT CGACAATTCT TTCTTTGTTT TGTGGTTTCA 
    TTGCGCATAG TTTTAGAAAA TGTGCACTTC AATGCTCTCT GTTAGCATTT 
    ATAGTGACTG AGACTCTCTT TGCTTGAGTA GACCGCCACA CATTCCTACG 
    TCTACTTCTC AGTGTTGAGT AAAAGTCAGC AATGTCAAGG AGAACTACCA 
    TTCAAGATTT TGTTAGCCTT TTCAGGGCTG CAACATAACC TACCGAAGAA 
    GAGTGGATAT AATACGCGAG TTTTTGAGTG CAAAGAGGCT GCCCGTGCTC 
    TTTTATGGTG AGCTTTGTTT GAGTATAACA AATTCTGTCA GGCAAATATG 
    CATCTTGTTC AGTTTGCAGA TTCGTCTATG ATGGATGTTG GCAGATTTTT 
    TGTTCAGAAC ATACCCAATT TCAATTATCA TTTTGTTGTT TGAATTCCCA 
    GTGCTTCAGG CTGTGAAGAT GCATCAAGTA TTCTTCGTAA TGGTAAACTA 
    TTTATATGTA CTTTTTGTTA TGACCAACTC TAAAATTTAA GGTTGATACC 
    ATTTTGTTTT CTTCTAACAC AGTTAACCCA GCCATATACG AGGCTCAGAA 
    GGTTGTCATT TGAATTCTCT CTCTTAAAAT ATTTTCTTAC TTGTACCATA 
    TTTTGAATCT GAATACATTC CATCACACTC TTTTCTTGCA GTGTATATTA 
    GAAGAAAATC TCGCTAGGAG AGCTGAGCAC TACTTCTCTG AGATGAAGCG 
    AGTTGTCAAG GGAAGAGATG CGTGGGCTCG TGGAGATCTT CGTGAGTTTG 
    GCCAGCTGAT CTCTGCATCT GGTCGCAGCT CCATACTGAA CTATGAATGC 
    GGGAGCAAGG AGATGATCCA GCTGTACGAG ATCCTCCTCA AGGCACCCGG 
    CGTCCTCGGC GCGCGGTTCA GCGGCGCCGG CTTCAGAGGC TGCTGCCTCG 
    CCGTCGTGGA GAGCGGCCAC GCGGAGGCGG CGGCGGCGTT CGTCCGGGCC 
    GAGTACGAGA AGGCGCAGCC GGAGCTGGTG AGCAAGATCC CGCCGGGCCG 
    CCGCGTGCTG GTCTGCGAGC CCGGTGACGG CGCCCGCGTC ATATAGCTCA 
    CCGCCCACCG CCGTACTGCC GGTCTCGCCG GAGCAGCCTC GCATTGCCGT 
    GCCCGGCGCG CCGCGAAGGC GGTGGCGTCG TGGCGACGCC GGCGTGCAAG 
    GATGGACGGT GGTCGCTTGG GCCTCGGCGC GGCGAGCTCC CCCGGTTTAC 
    GCGTACGGAG CTTGGCTAGT TCCAGTTGAG ACTTGAGAGT GGGTGTAATG 
    GTAATGGTAT AGGTACGAAC TGTCCGTGTG TATACGGGTA CAGACTACAG 
    AGTGCCAGCT TTTGTCCGTG TATGTGTAGA ACCAATTGAT GATCAATTTT 
    TGATAAATAT CTCAGC

    Gene models with high sequence identity

    1. AT3G10700.1 [+] show detail - galacturonic acid kinase
      E-value: 1e-38; Score: 159.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GHMP kinase, C-terminal 1.9e-11
    Gene3D no description 1.4e-27
    superfamily GHMP Kinase, C-terminal domain 5.4e-28
    HMMPanther GALACTOKINASE 2 1.9e-12
    HMMPanther MEVALONATE KINASE/GALACTOKINASE 1.9e-12

    See the detailed result >

    AT3G10700.1

    Model type
    Protein coding
    Short Description
    galacturonic acid kinase
    Curator Summary
    Encodes a GHMP kinase family protein that acts as a galacturonic acid-1-phosphate kinase that catalyzes the production of galacturonic acid-1-phosphate. This is a precursor of the important cell wall building block UDP-galacturonic acid. Based on gene trap line GT8007, the gene appears to be expressed in a petal and stamen-specific manner, between flower stages 8 to 11, however, later RT-qPCR analysis demonstrates that the transcript is present throughout the plant in all tissues tested.
    Computational Description
    galacturonic acid kinase (GalAK); FUNCTIONS IN: ATP binding, galactokinase activity, galacturonokinase activity; INVOLVED IN: carbohydrate phosphorylation, D-galacturonate metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactokinase (InterPro:IPR000705), Mevalonate/galactokinase (InterPro:IPR006206), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 3493 Blast hits to 3446 proteins in 1360 species: Archae - 42; Bacteria - 2414; Metazoa - 241; Fungi - 181; Plants - 121; Viruses - 0; Other Eukaryotes - 494 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR