K31920

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31920

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31920

Determination of introduced cDNA(s)

  • J033034D03 - Rice Full-length cDNAs - Original: J033034D03

    full reading [+] show sequence

    Nucleotide sequence: J033034D03 - full reading 
    GAGCACGCAA CCGAGTCGAG ACTAGACAAG GGGAGCAGCC GCCGCGATCC 
    AAGTCCTCCT CCGCCGCCGC CGACGCCGCC ATGGATCCGA AGCTGGTGGA 
    GGTGACGCAG CTCTTCTCCC GCTTCAAGGC AGCCTTCGCC AGGAACGACT 
    TCGACACCTG CGTAGACCTG CTGTCGCAGC TCAAGGTCCG CCTCACCAAG 
    TTCCCAAGCC TTCCTCCATC ATTTCAGCAG ACACCGAATG CAGTGGAAGA 
    GCTGAAAATT GCGAGGGACA TCTATGAGCA TGCAGTTGTT CTGAGTGTGA 
    AAATTGAAGA CCAAGATGCA TTTGAAAGGG ACTTTTGTCA ACTCAAACCT 
    TATTACATGG ATACATGCGG CATAATTCCA CCATCACCAC AGGAGTATCC 
    AATCTTGGGT CTTAATCTTC TAAGGCTGTT AGTTCAGAAC AGAATTGCAG 
    AGTTCCACAC TGAGCTGGAA CTTCTGCCGG TCACAGCACT TGAAAATCCT 
    TGCATCAAGC ATGCGGTGGA GCTTGAGCAG TCATTTATGG AGGGTGCTTA 
    CAACCGAGTG TTGAGCGCTC GCCAGGCTGT GCCCCACGAA ACATATGTGT 
    ACTTCATGGA TCTTCTTGCC AAAACAGTCA GAGATGAACT GGCTGGTTGC 
    AGTGAGAAGG GTTATGATTA TATGTCAATA GCTGAAGCAA GACAAGTGCT 
    GATGTTCAGC TCTGACAAAG AATTGCACCA GTACATCGCA GAGGAGCACC 
    CTGAATGGGA GGTAAAGGAT GGTTCCGTCT TCTTCCAGAA GGCGAAGGAG 
    ACCCAGCCCT GCAAGGAGAT ACCATCTTTG CAGGTTATCA ACCAAACGCT 
    CAGCTATGCT AGAGAGCTGG AGCGGATTGT ATGATTTGTT AATGAATATC 
    ATTTGAGATC ATTTGGGACG GCATGTTCAT GCTATGTACA CATCAGGTGT 
    CACGGTTGAG ATGCGCATGT TGCAGCTTTG AACGTTTGAG ATGCCCATGT 
    TACCTTATGA TACTTTTTTA AAAATTTCAT TTAATGGGCT GGATCTGTGT 
    CTGATGTTTG GCTGCCCAGT AACTCTGATC GTGTTTTGAT ATGTCAGTTC 
    GTGATCAATT TACTTTGCTG AATAGCTGTC CTGAAAATGT TCAGTATTAG 
    TCGTGAATTG CAACTGCAAA CTGTTGGGCT TATGATGATG AAATGAGATC 
    GTACTTATTT TGATGACC

    Gene models with high sequence identity

    1. AT1G64520.1 [+] show detail - regulatory particle non-ATPase 12A
      E-value: 2e-112; Score: 402.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 26S proteasome non-ATPase regulatory subunit Rpn12 1.8e-118
    HMMPfam SAC3/GANP/Nin1/mts3/eIF-3 p25 6.2e-29

    See the detailed result >

    AT1G64520.1

    Model type
    Protein coding
    Short Description
    regulatory particle non-ATPase 12A
    Computational Description
    regulatory particle non-ATPase 12A (RPN12a); FUNCTIONS IN: peptidase activity; INVOLVED IN: in 14 processes; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase 12B (TAIR:AT5G42040.1); Has 474 Blast hits to 474 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 129; Plants - 70; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR