K31938

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31938

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31938

Determination of introduced cDNA(s)

  • J033103F22 - Rice Full-length cDNAs - Original: J033103F22

    full reading [+] show sequence

    Nucleotide sequence: J033103F22 - full reading 
    GGGCAGATAC GAAGGGAACA TTCCAACCTC CTCCCACACG GCTCCACCAA 
    GAGGCGCGGC CCGCTCGATC CGCTGATTCA CCAGCGTCGG TCTGGTCGCC 
    GAGTGGCAAC GGAGGCCAAC CCCTACGCGA TGCCGTCGTC GAGCAGGACG 
    GAGACGGTGA AGAACGCGCT GTCGCGGTGG GCGCGGAGAG TCGGCGAGAC 
    GACCAGGAAG GCCGAGGACC TGTCGCGCAA CACATGGCAG CACCTGAGGA 
    CGGCGCCGAG CATCGGGGAG GCGGCCGTGG GGAGGATCGC GCAGGGGACC 
    AAGGTCCTGG CCGAGGGCGG CCACGACAGG ATATTCCGGC AGGCGTTCAG 
    CGCGCCGCCC GACGAGCAGC TCCGCAAGTC CTACGCGTGC TACCTCTCCA 
    CCTCCGCCGG CCCGGTGATG GGCATCCTGT ACCTCTCCAC GGCCAGGGTC 
    GCCTTCTGCA GCGACAGCCC ACTCTCCTAC GAGGCCGGCG GCGGCAGCAA 
    AGAGTGGAGC TACTACAAGG TGGCGATTCC TCTGCACAGG CTGAGGTCGG 
    CGAGCCCGTC GGCCAGCAAG CAGAGGCCCG CGGAGAAGTT CATCCAGCTC 
    GTGTCGGTGG ACCGCCATGA GTTCTGGTTG ATGGGCTTTG TGAACTACGA 
    CAGCGCGGTC AAGCACTTGC AGGAGGCTCT CAGCGGCTTC CACCACCTGC 
    AAGCGTGAGT GCGTGACAGG CGGCATCGGC ATTTGCCCGC GCTAATCTTC 
    GTTGTTCGCT GATTGACACG GCGTGATTTG TGTCTTGGGG TGTTTGTGCT 
    CTAGTTCTTC TTGCTGAGGA TATGTTTATG AGTGCATCGG TCACTTGAGA 
    TTGTTTGGGA TTGCGGATAT CTTCGATTGT TTGGAGATAC ATGTCACACA 
    TCTAAGATTC CTGAAGCTCT TCACTTAAAA TCTTATAGGT TTTGGAAACT 
    GTGGTTGCCT TATTTTTTTT TTTGAGAGAA TAGCCAACAT GATCCTTGAA 
    GTTTTGCTCC ATGATC

    Gene models with high sequence identity

    1. AT2G22475.1 [+] show detail - GRAM domain family protein
      E-value: 2e-66; Score: 249.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart GRAM 1.7e-15
    HMMPfam GRAM 2.9e-15

    See the detailed result >

    AT2G22475.1

    Model type
    Protein coding
    Short Description
    GRAM domain family protein
    Curator Summary
    Encodes GL2-expression modulator (GEM). Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision. GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters.
    Computational Description
    GL2-EXPRESSION MODULATOR (GEM); CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT4G40100.1); Has 360 Blast hits to 359 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 359; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR