K31939

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31939

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31939

Determination of introduced cDNA(s)

  • J013126H02 - Rice Full-length cDNAs - Original: J013126H02

    full reading [+] show sequence

    Nucleotide sequence: J013126H02 - full reading 
    GAGTGCTTGC CAATTCGGAG AAGGCATCGA GCTGAAGCCA CAGGGCGATC 
    GATGGAGGTG AGGTGAGGAG GAAGAAGAAG ACGAGATGGA GTTGGAGTGC 
    ACTTCACGCC ACATGAGGGA GATGCTATAA AATCCCTTCT CCCTTTTCAA 
    TTTCACGCCA ACACCCAACC CCCTCTCTCT CTCTATCTCT CTCCTCTCTC 
    TCTCTCTAGC TCTAGCTCTA GCTCGTCGCC GCCATGAACG TTCCAAGCAA 
    ATGCATGGCT CCTGCAAAGT AAAAAAAGAA GAAGAAGCAG CAGCTGCAGC 
    TTCTCTTCAG TATCGATCTT TAACTGTATC GAACTAGCTT AGCTTAGCTT 
    AGCTCTCTGC CATTAACTTG TGCTTCACTG AGCTTGAGCT AGCTAGCTTC 
    TTGGCTGTGT GACTGAGTAG CTCTAGCTCC TCGTCGTCGT CGTCGTCGTC 
    GTCGTCGTCG GCGTCGGTGG TGGTGTGAAT TGATAGAATT GATACGATGG 
    AGAGGGCGGC TGCGGCGGCG CCGGTGGTGG TGAGGCATGG AGGAGTGGTG 
    TTGCCGCCGG GGTTCAGGTT CCACCCGACG GACGAGGAGC TCGTGGTGCA 
    GTACCTCCGC CGCAAGGCGT TCGGCCTGCC GCTCCCCGCC GCCGTCATCC 
    CCGACCTCCA CAACCTCTTC AAGCTCGATC CCTGGGACAT TCCTGGTGCG 
    AGCAGCGACG GGGACAAGTA CTTCTTCGCC GTGCGGCCAC CTGCGGCGAG 
    GGGGAGGAGG CAGCATGTGA CGGCGAGCGG TGGGTGCTGG AAGCCGGCGG 
    GCGGGCGGGA CAAGCCGGTG GTGGTGGCCC GGTGCGGCGG GAGCCACCTC 
    GTCGGCGTCA AGAAGGGCAT GGTGTTCGTC CCACGGCAAG GGAGGAAGGC 
    ACCGGCGGCG GCGGCGGCGG CCGCCGGCGG TGGCTGCTGG GTCATGCACG 
    AGTACAGCCT CGCCCTGCCG ATGCACAAGA AGGGTTGCTT GGCTGAGGCT 
    GAAGAATGGG TAGTGTGCCG GATATTTCAG AGGAGCAGCA GCGGCAGCCG 
    GTCGCCGAGG AGGCCTGACA ACGACGTGAG GCGAACGATG CCGGCCGTCG 
    CCGAGCTCGG CCGGTCGCCG TCGCCATCGT CGTCGTCGTC GCAATCCAGC 
    TGCGTCACAA GCAGCTCCGA CCAGGGAGAG GTCAGCAGCG GCTAGCTAGC 
    TGAAGAAGAA TGCAGGCAGC AGCAGCAAGC AGCTAAGCTG CCTCTCAAAG 
    AGAGGCTTGA GTGTTAGCCT AGCTAAGCAT ATATATTTAT AGCCGGCCAA 
    ACCCTCTGAA AGTGATCTGC ATCAATGCAT GCCCCCCTTT AATTTCTTCT 
    TCCTCCTTAA TTATTTTTTC CCAACCATGT AATGTAATGT AATTTAATGT 
    AATGCAGTGT AATGTAACGG GAAGGAAGCA CTGAATTAAT CAAATTAAAT 
    TAGC

    Gene models with high sequence identity

    1. AT1G52880.1 [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
      E-value: 5e-27; Score: 119.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily No apical meristem (NAM) protein 1.1e-41
    HMMPfam No apical meristem (NAM) protein 3e-27
    ProfileScan No apical meristem (NAM) protein 40.176

    See the detailed result >

    AT1G52880.1

    Model type
    Protein coding
    Short Description
    NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
    Curator Summary
    Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.
    Computational Description
    NO APICAL MERISTEM (NAM); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT3G15510.1); Has 3040 Blast hits to 3032 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3034; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR