K31943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31943

Determination of introduced cDNA(s)

  • J033087G15 - Rice Full-length cDNAs - Original: J033087G15

    full reading [+] show sequence

    Nucleotide sequence: J033087G15 - full reading 
    GAGGGTTTAG CCGCCTCCGC TTCGATCGCT TCCTCCGTTG CCGCCGATCC 
    CGCCGGCGAA CGGCATGTGG CCGTCGCTCC GGCGAGCAGC AGCCGCCGCC 
    GGCGGCGCCA GGTTCAAGAA TGTTTCTCAT TTGCTTCCTA CATGTTCTGG 
    ATTAATGGAT AATAACCTGA ATGGTGGTTC TTTGAGGGGT CTGGGAGAAA 
    TTGGCTGCCA GGTGTCTTGT CAAGAACTCC CATTTGGTTA TTCAGGAACT 
    GGTTTCCCCT CGATTCGAAG ACTTTCCTCA GAGCCTGCAG AAAGGCCATT 
    CAGAAACAAA AATGATAGTG AGATATTGGG GGACGATGCG TCTGATCAAC 
    TACCAGATGA CAACTTGGAA TGTGATGACG AACTTGATCA ACATAATGTT 
    ATGATTGATG CGAGTGAGAC GAAGGCTAAG AATCTAAGGT CCCAGTTTCC 
    TGCAATAGAT CGTAGTGGTG ACACAAAACT GCAAAATAAA ACCTACAGGT 
    CTTATCTTTT CCAAATTGTG TTGGATGCTC CCTCAAATTC TCTCAGGCAT 
    GTGCTCGATA AGTGGATTGA AGATGGTAAC CAGCTTGAAA GAAACGACGC 
    TATGCTGGTT TTGTTTCACC TCAAGAAACA ACATATGTAT CGGAAGGCTT 
    TGCAGGAATG AGGTACTCTA TGAAACTCTA ATTGTGAACA GTGTGTTGGC 
    GGGCGATATC CAGAAAGCAG AAGAAGTCTT CAAGGAAATA AAAGACCTAT 
    GTTTGCGTTT AACTGTCACC CTCTGCAACC AAATGATACT GCTATACAAG 
    AGGATTGCTC CTGGAAAGGT AGCTAGCGTA CTCATGCTGA TGGAAAAGGA 
    AAATGTCAAG CCTTCTGCCT TTACATACAG ACTGCTGATT GACTTGAAAG 
    GGCGGTCAAA TGACCTGGCA GGCATTGAGG TGGTCTTAAA TGAGATGAAG 
    GCTTATGGCA TTGAGCCATC TACTTCAACT CAAACAATGG TTGCTAGGTT 
    CTACATCCAT GGTGGGCTCA CAGAGAAAGC GGAAGCAGTT GTGAAGGAGA 
    TGGAAGCGCA GCTCTCGAAT TCAAAGGACG GACGGCATGT CATCAAATCT 
    CTTCTTCACC TCTATGCTGC CCTCAACAAG CCAAATGATG TGGCCAGAAT 
    ATGGGAAATG TGCACAGAAC CTATGCTGGA GGATTTCTTG TCTGCAATCA 
    AGGCATGGGG TGAACTCGGG CTTATTGAAA AAGCAGAGGA GACCTTTGAG 
    GCGATGGCGA ACGCACCAGA AAAGCTATCT TCCAAGTACT ACAATGCGAT 
    GCTGAATGTG TACGCGCAGA ATAAACTTCT TTCTAAGGGC AAACAGTTTG 
    TGGAAAGGAT GTGCCGTGAT GGGTGCCCGA ACGGTCCTCT AACCTGGGAT 
    GCACTCATCA ATCTCTATGT GAATTCAGGT GAGGTGGAGA AAGCCGACTC 
    ATTCCTCCTG AATGTGGCAG AAGAAAATCC TGACAGAAAG CCGCTTTTCA 
    CCTCGTACTT CTTCTTGATG AAGGGATATG CGAAAAGGGG TGATATCCAT 
    AACACTGAGA AGATATTTGA TAGGCTGAAG AATGTCGGGT ACGCACCAAG 
    GCCACTACAT TATGCTGTTC TTCTTGAAGC GTATGTCAAT GCCAAAGTTC 
    CAGCCCATGG GTTCTTGGAG AGGATGAGAG GTGACAATGT GCGCCCAACA 
    AAGAAAATCG TTACATCTCT TGACACCTTA CAGAAAGGAT GGATTGCAGG 
    CTTAGACTGA ATTTTCTCTC TTTTGTTCTT GGGATGGATC ACACGATGCA 
    TTTCTTGAGT AGTTTTACAG AACAGAGACT ACTTGGAGCC CGGTAAACTG 
    CACAGCAGAA GAATCAATTT TGCTTTTGAT GTCTTCCAGA TTTGATTTTG 
    TGCTCTTGGT AGAGATGATG TTCTGATATT ACATTATTAT GGTCATTGTT 
    TTAGGATGCC ACTATTAGGC TATTATTCTG AGTTGGGCAC TTCACCTAAT 
    GATGGTTTTT TTTAAAAAAA AAAACACCTG ATGCTCTAAA TAATGAAGGG 
    AGAGGAACGA GGATGCTTTG TTTAGGACAT TTGCTTCCTT GCCATCAAAT 
    TATAGGCTTA GATTTTGACA ATGGAACAAA TTACTTCTAG ATTCAAAATT 
    GGAATTATGT AAAACTGCTG ACAAGT

    Gene models with high sequence identity

    1. AT1G80270.3 [+] show detail - PENTATRICOPEPTIDE REPEAT 596
      E-value: 5e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 0.36
    HMMPfam Pentatricopeptide repeat 0.79
    HMMPfam Pentatricopeptide repeat 0.00018
    HMMPfam Pentatricopeptide repeat 0.058
    HMMPfam Pentatricopeptide repeat 0.34
    superfamily TPR-like 1.8e-15
    ProfileScan Pentatricopeptide repeat 7.607
    ProfileScan Pentatricopeptide repeat 8.725
    ProfileScan Pentatricopeptide repeat 6.095
    ProfileScan Pentatricopeptide repeat 9.164
    ProfileScan Pentatricopeptide repeat 5.448
    ProfileScan Pentatricopeptide repeat 7.048
    ProfileScan Pentatricopeptide repeat 8.802
    Coil coiled-coil 0
    HMMTigr Pentatricopeptide repeat 0.01
    HMMTigr Pentatricopeptide repeat 0.0018
    HMMTigr Pentatricopeptide repeat 1.3
    HMMTigr Pentatricopeptide repeat 0.0028
    HMMTigr Pentatricopeptide repeat 0.73
    HMMTigr Pentatricopeptide repeat 0.16
    HMMPanther DNA-BINDING PROTEIN 6.1e-74
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6.1e-74

    See the detailed result >

    AT1G80270.3

    Model type
    Protein coding
    Short Description
    PENTATRICOPEPTIDE REPEAT 596
    Computational Description
    PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR