K32028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32028

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32028

Determination of introduced cDNA(s)

  • J033120H12 - Rice Full-length cDNAs - Original: J033120H12

    full reading [+] show sequence

    Nucleotide sequence: J033120H12 - full reading 
    GAAAGGCCCA AAACACCCAC ACGCACGACT TCTTCGTCGG CGTCGCCGCG 
    CCGCCGCGCC GCCGCCGCCG CCTCCGGCCG GCCGGCCGCA CCTCCACCAC 
    CGCACAGCAC CTCTCAGCTC TCACCCGCGG GGAGAAGGGA GGAACACGGA 
    GAAGGCTCAG ACTCGCCAAT TTCATGGAGA TTGCATCTCG GCTGTGTTGA 
    TGCGTCGCCC ATGCACCCAC TCACCCTCTC CTCCACCGCC CTCCTCCGCC 
    TCATCAAGTC GCTCTCGCCG GCGGTGCGTA GGGCCCACCT GTCGGCGTCC 
    TCTATCCACT GCCTCCTCCT CAAGGCCGGC CTCCTCCACG TCGGCGCGCA 
    CCTCCCGACG GCGCTCCTCT CCGCGTATGC CGCCCTCGGC AGCCCGGATC 
    ACGCGCGCAG GCTGTTCGAC GAAATGCCCG AGCAAGGCCT TGTCCCGCGA 
    ACCGCCATGG CCCGGGCGCA CGTCGCGTCT GGGCAGGCGG CTCAAGCGAT 
    CGCCGTATTC GGGGACATGG TGGCGGATGG TGTCTTCCCG GACAATGTCG 
    CCCTGGCAGT CGCGCTTGGG GCATGCCATG GCGCTGGCTC TTGGACGGCT 
    AGGAGGAATC CAGGCAAGAA GATCCATGCT CTCATCGTGA CCAGCGGCAT 
    TGAGCCAGAT GTGTTTGTCT CCACCGAGCT GATAAGGGTC TACGGTGAGT 
    GTGGCAAGCT GGCGGTTTCT AGGAGGGTGT TCGATGACAT GCCGTCGAGG 
    AGTACCATTA CATGGAACGC CATGTTGCAT CAGTATGCCA GGCACGGGAA 
    AGTTGACACG GCTTATGAGC TGTTCCTCGC AATGCCGAGG AGAGATGTTG 
    TGTCCTGGAA CACAGTGATG GCCGGGTACT GTGTTGCTGG CCGGTGCAGG 
    GAGGCACTTG GCTTGTTCCG TCAGATGGTG TCGCCGTCAT CGTGTGCGGT 
    GCATCCTAAT GTGCCTACGA TGAGCACTAT CCTCGGTGCT TGTGCCGGCG 
    CGGGTTGTTT GGAGACCGGG ATTTGGGTCC ATGCATATAT TGAGAGGAAC 
    AGGATGAATG ATGATGGCTA TCTGGATCGG TGCCTGATAG ACATGTACTG 
    CAAATGCGGA AGCATCGATA ATGCCCTACA GGTGTTTGAG AAGGCACCTA 
    GGAAGAGGGA CCTGTTCTCA TGGACAACCG TGATCTGTGG GCTGGCAATG 
    CACGGCCGCG CCACTGATGC TTTGAGAATG TTTGACATGA TGCAGGATAA 
    TGGCATATGC CCGGATGATG TCACGCTTGT TGGGGTCCTA AATGCTTGTG 
    CACATGGAGG TTTGGTAGAC GAAGGTCTTG GCTACTTCTA CTCCATGGAG 
    GCAAAATTTA GAATCACACC CAAGATTGAA CACTATGGTT GCATGATTGA 
    TCTTCTTGGC CGCGTTGGGC GACTGCAGGA AGCATATAGC ATGATAAGAA 
    CAATGCCAAT GGATCCCAAC ACGGTTATTT GGGGTGCATT CTTGAGCGCG 
    TGCAAAGTTC ATGGCAATAT GGAACTCGGC AAGATTGCGG CAGAAGAGCT 
    CACCAGGTTG GATCCAGATG ACCCTTGGGG GAGAGTGATG CTGTCCAGCA 
    TGTACGCGAA AGCACAGGAT TGGATTGGTC TTGCCCGGGA GAGGAGGGAG 
    ATGAACAGCA TGCAGGTGAA GAAGACTCCT GGGTGCAGCT CGATCGAGCT 
    CAAAGGCGAG GTGCATGAGT TTGTTGCTGG TGGCAGTCAG CATCCTCAGT 
    ATGCTGAGAT TTGCAGTGTA CTGCAAGATG TTGAAGCTCA AACAAATGTA 
    GGTTGAGACA CACAGCCTTC TGTTGAGCTT CTTGTGCTGC CAGGATTTCA 
    GCACAGGTGC AATTTCCTCT GAGCCTTCAC GAGAACGCTC CTTGCTTTGC 
    ACGTCGGCAT GTGGAGAACC GAAGAGAAGA TTAGCTAATT AGTCAGTTAA 
    AATGCGAAGA ACTGACAATT TTGCTCTGAA TCCAATATAA ACTTCAATAT 
    GCTGATTTTA TGAGCTAGGG TTCAGAGTTT ACACGGCCTA GAGGGTGGTG 
    TCAGCTTGAT TGGCATAAGA GGAGACAATC TAGTCGGATA AAGACCTTTG 
    AGGGAGATGG AATAGATTAA TACATCTTCA TCGCTTGATT GCTAGTAATG 
    GATACATGAC ACCCTTTTAT AGGGCATGGC TTTGACTGGA CAGCTGATAC 
    ATGGAATAAT AATCTCTGCT CAACAGCTGA TGAAATTTCT TTTAACTTCG 
    TCAATTTGAA GCGACGAAAG AATGTTGAAG CTAGTTTACA CATGCATTCA 
    ACCTTTTCCC GTGAAGGCAT ACTGAGCATT GCACTCAGGA ACCTCTTTCA 
    GATTTTTTTA GTGTATTATT TACCCTTTTA TGTGCTTTCC GTGCCTTAAT 
    GTTTGTCAGA GTGTTGATGG CATGGGCACA AGCACATTCT TTATTTGTTT 
    TGTTTTCAAG GGTTAATTTG ATCCATGCCA CTGCAAATGT GGCAAATCAA 
    AAAATATGCC ACTACTATTG ACGTTATCTA TTGGTGCCAC TATAAATTCC 
    TAAAATTGG

    Gene models with high sequence identity

    1. AT2G22410.1 [+] show detail - SLOW GROWTH 1
      E-value: 6e-98; Score: 355.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Pentatricopeptide repeat 10.227
    ProfileScan Pentatricopeptide repeat 5.831
    ProfileScan Pentatricopeptide repeat 11.17
    ProfileScan Pentatricopeptide repeat 7.399
    ProfileScan Pentatricopeptide repeat 7.081
    ProfileScan Pentatricopeptide repeat 6.007
    ProfileScan Pentatricopeptide repeat 7.881
    ProfileScan Pentatricopeptide repeat 11.751
    ProfileScan Pentatricopeptide repeat 7.059
    ProfileScan Pentatricopeptide repeat 6.741
    HMMPfam Pentatricopeptide repeat 0.00019
    HMMPfam Pentatricopeptide repeat 2.4e-06
    HMMPfam Pentatricopeptide repeat 6.9e-08
    HMMPfam Pentatricopeptide repeat 0.0046
    HMMPfam Pentatricopeptide repeat 3.8e-06
    HMMPfam Pentatricopeptide repeat 0.46
    HMMPfam Pentatricopeptide repeat 0.023
    HMMTigr Pentatricopeptide repeat 0.00046
    HMMTigr Pentatricopeptide repeat 0.76
    HMMTigr Pentatricopeptide repeat 0.0042
    HMMTigr Pentatricopeptide repeat 5.7e-05
    HMMTigr Pentatricopeptide repeat 1.4
    HMMTigr Pentatricopeptide repeat 1.1e-09
    HMMTigr Pentatricopeptide repeat 0.1
    HMMTigr Pentatricopeptide repeat 0.049
    superfamily TPR-like 6.6e-26
    superfamily TPR-like 2.9e-12
    HMMPanther SELENIUM-BINDING PROTEIN 1.8e-189
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.8e-189

    See the detailed result >

    AT2G22410.1

    Model type
    Protein coding
    Short Description
    SLOW GROWTH 1
    Computational Description
    SLOW GROWTH 1 (SLO1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 42589 Blast hits to 14346 proteins in 282 species: Archae - 0; Bacteria - 11; Metazoa - 210; Fungi - 265; Plants - 41374; Viruses - 0; Other Eukaryotes - 729 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR