K32041

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32041

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32041

Determination of introduced cDNA(s)

  • J013002H20 - Rice Full-length cDNAs - Original: J013002H20

    full reading [+] show sequence

    Nucleotide sequence: J013002H20 - full reading 
    GAACCAGATC CCGCTCACGA GTTCCTCACT TCCTCCTCCG CCCGCGTCGC 
    CCCTCCTCTC CTCTCCCTCC CGGCTCCCGG CTACCGCCGC CGCCGCCCCG 
    AGGAAATGGC TGCCCTGCAA CCCTCATTCT CTTCAGCAAT GGCTATGAAA 
    AGTCTGAAGT TACCCAAAAC TGCAGCTTTA CCTGGATTTG GTGGTATTGC 
    ACGTCCTCAA GATGTGCAGG ACAGGAGCGC TAACTTCACT TGTTCAAGGC 
    CTAGAGCAGC TTCAGTGACT GACCAGTCAA CAGCAGAGCC AGCAAAACCC 
    AGGCAAAACA AGCACACTGT TGATCCTTCT GCTCCAGAAT TTCTGCCACT 
    CCCATCATTT GAAGAATGCT TTCCAAGGAG CACAAAAGAA TCCAGAGAAA 
    TTGTGCACGA GGAATCTGGC CATGTCCTCA AGATCCCATT TAGGAGAATC 
    CATTTGACCG GAGATGAGAA GCATTTTGAC ACATACGACA CCAGTGGTCC 
    ACAAAACATT AGTCCAAGGA TTGGACTTCC AAAGATAAGG AAGGAATGGA 
    TTGACAGGAG GGAGAAGTTA GGTGGTCCTC GATACACACA AATGTATTAC 
    GCTAAGCAGG GAATCATAAC AGAGGAGATG TTGTACTGTG CCACACGTGA 
    GAACCTTAGT CCTGAATTTG TCCGGTCAGA GGTTGCCCGT GGACGAGCTA 
    TAATTCCTTC CAACAAGAGG CACCTGGAAT TGGAACCAAT GATTGTTGGA 
    CGAAACTTCC TTGTAAAAGT GAATGCAAAC ATTGGGAATT CTGCTGTTGT 
    GAGCTCCATC GAGGAGGAAG TACACAAGCT CCAGTGGGCT ACAATGTGGG 
    GAGCTGATAC TGTCATGGAC CTTTCAACAG GGCGTCATAT CCATGAGACC 
    CGGGAATGGA TCCTTCGTAA TTCTTCAGTC CCTATTGGGA CGGTGCCTAT 
    TTACCAAGCA CTTGAGAAAG TTAATGGTAT TGCTGAAAAT CTAAGCTGGG 
    AAGTCTTTAG AGATACTTTA ATCGAACAAG CTGAGCAGGG TGTTGATTAC 
    TTCACAATCC ATGCTGGCGT GCTTCTTCGT TACATTCCTC TTACGGCAAA 
    GAGAATGACC GGCATAGTTT CACGTGGTGG CTCTATCCAT GCAAAATGGT 
    GCCTAACATA TCATAAGGAG AACTTTGCCT ATGACCACTG GGATGAAATT 
    CTTGATATTT GCAATCAGTA TGATGTGGCA TTATCCATTG GCGATGGTTT 
    GAGACCAGGT TCTATTTATG ATGCAAATGA TAGTGCTCAG TTTGCAGAAT 
    TGCTGACTCA AGGGGAACTC ACACGCCGAG CTTGGGCAAA AGATGTGCAG 
    GTAATGAATG AAGGCCCAGG GCACATTCCG ATGCATAAAA TTCCTGAAAA 
    CATGGAGAAG CAACTGGAGT GGTGCAATGA AGCACCTTTC TACACACTGG 
    GGCCACTGAC AACTGATATT GCACCTGGTT ATGATCACAT CACCTCCGCC 
    ATTGGTGCTG CCAACATTGG GGCTCTTGGC ACTGCACTTC TCTGTTATGT 
    AACACCAAAG GAGCACCTTG GATTGCCTAA CCGTGATGAT GTTAAGACAG 
    GCGTGATATC CTACAAAATT TCTGCTCATG CTGCTGATTT GGCAAAGGGC 
    CATCCCTATG CACAAGCATG GGACGATACA CTAAGCAAGG CAAGATTTGA 
    GTTTAGATGG TTGGATCAAT TTGCTCTATC TCTGGATCCT GTGACCGCTA 
    TGTCTTTCCA TGATGAAACA TTACCATCGG AGGGTGCCAA AGTGGCACAT 
    TTCTGCTCAA TGTGTGGCCC AAAGTTTTGT TCGATGAAAA TCACAGAGGA 
    TATTAGAAAA TATGCTGATG AACATGGTTA CGGGACAGTG GAGGAAGCGG 
    TGATACAAGG AATGAATGCT ATGAGTGCTG AGTTTTCAGC TGCAAGGAAA 
    ACAATCAGTG GGGAGCAACA TGGTGAAGCT GGAGGGGAGA TATATGTTCC 
    AGAAAGCTAT ACAGCTCGCA AATAAGATCG TCTTGGTGTC CATCTACTCC 
    GGGTGGAGCG TTTATCAGCA GCACTCCTCA CCATCCTATG TTAGGAGGTG 
    GGGTGCCTGT ATTCTCAACG ATCTGAAGGC CTCTTGGCCT GGATTGTTGT 
    GAATTGGGCT GAGAAAGTCC CTTTGAACCT GAACAGGATA ATGCCTGCGA 
    AGGGAGTGTG CATTTCTACT TTTATGTTTC CAGGGAACTC TCAACACAAC 
    CCCTTTTTGG TGGGAGATCG AGCTATCCAA TATGTTCCTG AACGTGTGAG 
    CTCAGCAGCT GGATATACCT GTTTCTTACA ACTGAGGTAA CATGGTAATA 
    ATACTTCATT TGATAAGTGG CATGCTGACA TTTCTCCAAC AGGAGAGGAT 
    TTCTGCAGAT ACCACTTCGT AATGTCCCAG AACTGATTTA GTCATACATT 
    TATTATCCGT GTAAATTTGC AAAGCGTTGG CCATGTCCTA TGCAATTGAT 
    TTTAAACCAT CTATCTGCAC ATATCTAATT AAAGTATAAA ACAATTTATA 
    AACTCTACAT AATGGACATT TTAGCTGCAT GCCACTTGTC AATTGAGCAC 
    ACAATATACT GACTAAATTC AATTTAACTT GATCATGATT CATGTGGAAG 
    GTGTTTATTA GGAATTAATT TATTGATATG GCCAGAGACT TGTTTATTTT 
    TAGCTATTTA TTTGTCTTTC CCATAGAAAT GATCAAATTT TGTACTTGCA 
    CCTTGTGTAA GTATAATAGA ATTATTTAGT CTGTTTTGGA GCATTCATTA 
    ATGCAATGAT GCTCAGCCGC TCAGATCTTT GCGTAGCATT ATCCAAGAAA 
    ACAAGTCTTT TTGTATCCCC TAGATAATTT GAAAGCACCC ATACATGCAC 
    AATAGCATGT GAAAAAGAAC TTTAGCTAGG TTCTGTTGAC CGATTATGTT 
    GTAGGATAGG AATCATCTGC CTGTAGAACA TAATTTGGGC ATTATCTTCT 
    GATGTTATAA TCATGTTTTT CTCAGCAAAC TATTACTCCG CACTCCATTT 
    TGTGTTTGCG ATGTGGAATT ATTTTACCTG TGATCCAATC CCATTATTTG 
    ACTGACGTGA AACGTTAAGT GAAATGACGT GTGGACAAAG TTGCTCGTGG 
    CTGGAGTCTT TATGCTCGTG GTTAACAATT TGGAGATGAA TTTTGCTCTG 
    ATTGTGCTCC TGCAATGTGT TTTTAATTTT CATCATAACG GATCTTGACA 
    CTATTTTCTA TCAGATTGTT ACCTGTTGTT CATTCCGAGT TCAGTACTAC 
    T

    Gene models with high sequence identity

    1. AT2G29630.3 [+] show detail - thiaminC
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Thiamine biosynthesis protein ThiC 9.3e-219
    HMMPfam Thiamine biosynthesis protein ThiC 5.5e-195
    HAMAP Thiamine biosynthesis protein ThiC 52.483

    See the detailed result >

    AT2G29630.3

    Model type
    Protein coding
    Short Description
    thiaminC
    Computational Description
    thiaminC (THIC); CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis protein ThiC (InterPro:IPR002817).
    Link
    InterPro Scan - TAIR