K32044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32044

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32044

Determination of introduced cDNA(s)

  • J033133B05 - Rice Full-length cDNAs - Original: J033133B05

    full reading [+] show sequence

    Nucleotide sequence: J033133B05 - full reading 
    GACTTGCTTC CGCTGCTTCT CCTCTCCATA AGAGCACCCA CCAACTCAGC 
    CTCTCCTCCC ATCGCCGCCG CCAATGCCGG CCTCCACGGC CTCGCCACCG 
    CCGCACCTCG TCTGAACCCC CGTCTTGCTG CCGCCGGAAA CCGCGTCGAG 
    AAGTTAACCA TGGGGTCTGG CTCACTCCTC CTCTCCCTCT TGCTGGTGCT 
    CGTCGTCGTC AATGTCGGGG TGGCGGTGAA CCAGGACGGG CTGTCCCTGC 
    TCGACGCGAG GCGCGCGCTC GCCGCCCCGG ATGGCGCGCT GGCGGACTGG 
    AACGCGCGCG ACGCCACGCC CTGCAGCTGG ACGGGCGTCT CCTGCGACGC 
    CGGCGTCGGC GGCGGCGCCG TGACGGGGAT CTCCCTCGCG GGCCTCAACC 
    TCACCGGGTC GTTCCCGGCG GCGTTGTGCC GCCTCCCGCG CGTCGCGAGC 
    ATCGACCTGA GCTACAACTA CATCGGCCCC AACCTGAGCT CCGACGCCGT 
    CGCGCCGTGC AAGGCGCTCC GGCGGCTCGA CCTGTCGATG AACGCGCTCG 
    TCGGCCCGCT CCCCGACGCG CTCGCGGCCC TCCCGGAGCT CGTGTACCTC 
    AAGCTCGACA GCAACAACTT CTCCGGCCCG ATACCGGAGT CGTTCGGCCG 
    GTTCAAGAAG CTCGAGTCGC TCTCCCTCGT CTACAACCTG CTCGGCGGCG 
    AGGTCCCGCC GTTCCTCGGC GGCGTGTCCA CGCTCCGGGA GCTCAACCTG 
    TCCTACAACC CGTTCGTGGC GGGGCCCGTG CCCGCCGAGC TCGGCAACCT 
    CTCCGCTCTG CGCGTGCTCT GGCTCGCCGG CTGCAACCTC ATCGGCGCCA 
    TCCCGGCGTC TCTCGGCAGG CTCGGCAACC TCACGGACCT CGACTTGTCG 
    ACGAACGCGC TCACCGGCTC GATACCGCCG GAGATTACGC GGCTGACGAG 
    CGTCGTGCAG ATCGAGCTGT ACAACAACTC GCTCACTGGG CCGATTCCCG 
    TGGGGTTCGG CAAGCTCGCG GAGCTCCAGG GCGTGGACCT CGCCATGAAC 
    AGGCTCAACG GCGCCATCCC GGATGACTTC TTCGAGGCGC CGAAGCTGGA 
    GAGCGTGCAC CTGTACGCCA ACTCGCTGAC GGGGCCCGTG CCGGAGTCGG 
    TGGCGAAGGC GGCGTCGCTC GTCGAGCTGC GGCTGTTCGC CAACCGGCTG 
    AACGGCACGC TGCCGGCCGA CCTCGGCAAG AACAGCCCTC TGGTGTGCGT 
    GGACATGTCC GACAACTCCA TCTCCGGCGA GATCCCGCCG GCGATATGCG 
    ACCGCGGCGA GCTCGAGGAG CTTCTTATGC TCGACAATAA GCTCTCCGGT 
    CGCATCCCCG ACGGGCTCGG GCGTTGCCGG AGGCTGCGGC GGGTGCGGCT 
    GTCGAACAAC AGGCTCGACG GCGACGTGCC CGCCGCGGTC TGGGGCCTGC 
    CGCACATGTC GCTGCTCGAG CTCAACGACA ACCAGCTCAC CGGAGTGATC 
    TCTCCGGTCA TCGGCGGCGC GGCCAACCTG TCCAAGCTGG TGCTGTCCAA 
    TAACCGGCTA ACTGGTAGCA TCCCGCCGGA AATTGGCTCG GCCTCGAAGC 
    TGTACGAGCT CTCCGCCGAC GGCAACATGC TCTCCGGCCC GCTCCCTGGG 
    TCTCTTGGCG GCCTCGAAGA GCTCGGCCGG CTTGTTCTCC GGAACAACTC 
    GTTGTCAGGT CAGCTGCTCC GGGGAATCAA TTCTTGGAAG AAGCTTAGTG 
    AGCTCAACCT CGCCGACAAT GGCTTTACCG GAGCAATTCC AGCAGAGCTC 
    GGCGATTTGC CGGTGCTGAA CTACCTTGAC CTCTCCGGCA ACCGTCTCAC 
    CGGTGAGGTA CCAATGCAAT TGGAGAATCT GAAGCTGAAC CAGTTCAATG 
    TCTCCAATAA CCAGCTCAGT GGCGCGCTTC CGCCACAGTA TGCGACGGCG 
    GCATATCGAA GCAGCTTCTT GGGCAACCCG GGGTTATGTG GAGATAATGC 
    CGGTCTATGT GCCAATTCAC AGGGAGGTCC TAGATCCCGC GCTGGCTTCG 
    CCTGGATGAT GCGCTCAATT TTCATATTTG CGGCTGTTGT TCTGGTTGCT 
    GGAGTTGCGT GGTTCTACTG GAGGTACCGG AGCTTCAACA ATTCTAAGCT 
    AAGTGCCGAC CGTTCGAAAT GGTCATTGAC ATCATTCCAC AAGCTCTCAT 
    TCAGCGAGTA TGAGATCCTG GATTGTCTTG ATGAGGATAA TGTGATTGGT 
    AGTGGCGCAT CCGGGAAAGT GTATAAGGCA GTGCTCAGCA ATGGTGAGGT 
    GGTTGCCGTT AAGAAGCTTT GGGGGTTAAA GAAGGGGACG GATGTTGAGA 
    ACGGGGGTGA AGGATCCACA GCTGACAACA GCTTTGAGGC GGAGGTGAAG 
    ACTCTTGGCA AGATTCGCCA CAAGAACATT GTCAAGCTCT GGTGTAGCTG 
    CACGCACAAT GACACCAAGT TGCTGGTGTA CGAGTACATG CCCAATGGTA 
    GCCTAGGAGA TGTGCTACAC AGCAGCAAGG CTGGTTTGCT GGATTGGTCG 
    ACGCGGTACA AGATTGCTCT GGATGCAGCG GAGGGGTTAT CCTATCTTCA 
    CCATGACTAC GTCCCTGCGA TCGTCCATAG GGATGTCAAG TCGAACAACA 
    TCCTCTTGGA TGCTGAATTC GGTGCCCGTG TTGCAGACTT TGGGGTTGCC 
    AAAGTGGTAG AAGCCACTGT CCGGGGCCCC AAGTCGATGT CAGTGATCGC 
    GGGTTCATGT GGTTACATTG CACCTGAGTA TGCATACACA CTCCGCGTCA 
    ATGAGAAGAG CGACATATAC AGCTTCGGAG TGGTTCTTCT TGAGCTCGTG 
    ACAGGGAAAC CGCCAGTCGA TCCAGAGTTC GGCGAGAAGG ACCTGGTGAA 
    GTGGGTGTGC AGCACAATTG ATCAGAAGGG GGTAGAACAT GTCCTCGACA 
    GCAAACTCGA CATGACCTTC AAGGATGAGA TCAACAGGGT GCTGAACATC 
    GCCCTCCTCT GCTCGAGCTC CCTACCGATC AACCGCCCGG CGATGCGCAG 
    GGTGGTCAAG ATGCTGCAAG AAGTGCGCGC CGAGGCCACA AGGCCAAGGC 
    TGGAGAAGGA CGGCAAGCTG TCGCCATACT ACTACGAGGA CACCTCCGAT 
    CAAGGGAGCA GCGTGTAAAG GTAAAAACCC CCAAAAGAGA AGAAGATGAC 
    AATAGGCCAA TAGCTGCTTC CATGAATCTT CTCCCATGGC TTGTAGAGCT 
    GTAGCTAGGT AGGAAAGCTG CAATCATAAC CCAGTCGTGT CCAAAATTCT 
    ATAGTTGCTG ATTTTGAGCG CTGAATTTGC TCGCCGCCGA CGCCGGCCTC 
    CGACAGCACG GTTAACTCTG GAGCTGTGCA CTCCAGTCCG GCAATGGAGG 
    ACAGTAAGCT GGTGGGTGCC CGGTGTTCTT GGTTGTCCTT GCTGTATGTG 
    GACCGTGCCA TTGATGCCGG TAGGGCAGAT CGCTCGTCTG CTGTCCATCG 
    AGAGAAGAAA AGTCTGTGAC GGAATCAAAT GTAGGTGTGT ACTGTAATTA 
    GTACTGCTAC TTTGCCTTTT CTCCTGAGAT AAGCTAGGAG TATTGTTCAA 
    GGCT

    Gene models with high sequence identity

    1. AT1G28440.1 [+] show detail - HAESA-like 1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 1.2e-45
    HMMPfam Leucine-rich repeat 0.13
    HMMPfam Leucine-rich repeat 0.16
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 4.7e-11
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 7e-72
    superfamily L domain-like 1.4e-59
    superfamily RNI-like 1.1e-58
    HMMSmart Serine/threonine-protein kinase domain 2.6e-36
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.7e-18
    ProfileScan Protein kinase, catalytic domain 37.941
    Gene3D no description 6.5e-31
    Gene3D no description 1.3e-44
    Gene3D no description 1.5e-55
    Gene3D no description 4.1e-16
    Gene3D no description 2.3e-47
    HMMPanther LRR RECEPTOR-LIKE KINASE 4.5e-245
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 4.5e-245

    See the detailed result >

    AT1G28440.1

    Model type
    Protein coding
    Short Description
    HAESA-like 1
    Computational Description
    HAESA-like 1 (HSL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT4G28490.1); Has 214855 Blast hits to 132793 proteins in 4138 species: Archae - 139; Bacteria - 23060; Metazoa - 65756; Fungi - 10225; Plants - 90032; Viruses - 401; Other Eukaryotes - 25242 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR