K32231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32231

Determination of introduced cDNA(s)

J023054K02 - Rice Full-length cDNAs - Original: J023054K02

full reading [+] show sequence

GAGCCCAGCC CGCCAAACAC GCACCGTCTC GCAGCCTCGC AGGTTAACCC 
TGCTGCCTAC TCCGCCGCCT CCTCCTCCCC CCGCCTCGCC TCGCCGCCGC 
GGCCGAGACC TCAAAGCCCT AAACCCACCC ACCCACCCCA TCTCTCCCTC 
TCTCCTCCCT CCCATGGCGC GCCTCAACCC CTCCAAACCC AGCTCCCGCG 
GAGGCAAGCC GAGGTCCTCC TCCGCGGACG CCATGGCGGA GCACAAGCCG 
CTGCCGGGGC GGCCGAAGCG GGAGGGGGAA GGGGCGAGCA AGAGGAAGGC 
CAAGTCGGGC GGGTTCGAGT CGATGGGGCT GTGCGAGGAG GTGTACCGCG 
GGGTGCGCCA CAAGGGGTAC CGCGTGCCCA CCCCCATCCA GCGGAAGGCC 
ATGCCGCTCA TCCTCGCCGG CCACGACATC GCCGCCATGG CGCGCACGGG 
CTCCGGGAAG ACCGCCGCCT TCCTCGTGCC CATGATCCAG CGCCTCCGCC 
GCCACGACGC GGGCGCCGGC ATCCGCGCGC TCATCCTCTC GCCGACCCGC 
GACCTCGCCA CGCAGACGCT CAAGTTCGCG CAGCAGCTCG GGAAGTTCAC 
TGATCTAAAG ATTAGCCTGA TTGTTGGTGG AGATAGCATG GAGAGTCAGT 
TTGAGGAATT GGCAGAAAAT CCGGATATCA TAATTGCAAC ACCTGGCAGA 
CTCGTGCACC ATCTGGCGGA GGTTGAGGAC TTGAATCTTC GGACAGTGGA 
ATATGTTGTG TTTGATGAGG CAGATTCCCT CTTTAGCTTG GGGTTAATCC 
AGCAGCTGCA TGACATTCTA CATAAGCTGA GTGATACACG ACAAACATTG 
CTCTTCAGCG CCACCTTGCC ACAAGCCCTT GCAGATTTTG CAAAAGCTGG 
TCTACGTGAC CCACAAATTG TAAGACTTGA TTTGGACAAA AAGATCAGTC 
CTGATCTTAA ACTTGCCTTT TTCACGCTGC GTCAGGAGGA GAAATTAGCT 
GCTTTACTGT ACTTGGTCAG GGAGCGAATC AGCTCTGAGG AACAGTCAAT 
AATATTTGTT TCAACCAAGC ATCATGTGGA GTTCCTAAAT ATTCTGTTCC 
GGGAGGAGGG CTTAGAACCT TCCCTTTCCT ATGGTGCTAT GGATCAAGAA 
GCCCGCAATA TTCATATTTC AAAATTCAGG GCAAGGAAAA CTATGATACT 
TATTGTGACA GATGTTGCTG CAAGGGGTCT GGATATTCCA TTGCTTGATA 
ATGTGGTGAA CTGGGACTTC CCTGCAAAGC CTAAATTATT CGTTCATAGA 
GTTGGCAGAG TAGCTCGACA AGGTAGAAGT GGCACAGCAT ATACTTTTGT 
CACTTCGGAG GACATGGCAT ATTTATTGGA CCTACATCTT TTCCTTTCAA 
AGCCTCTTAG ACCTGCTCCA ACAGAGGAGG AACTTCTGAA GGATATGGAG 
GGAATGAATT TAAAAATTGA TCGTGCTCTT GCAAATGGAG AAACTGTGTA 
TGGGCGTTTT CCTCAGACAA TCATTGATCT TGTATCTGAT GGAATAAAAG 
AAGTCATCAA TGGATGTACA GATCTAATTG CATTGGAAAA GCCATGCACT 
AATGCTTTCC ATTTGTATCT GAAGACTCGT CCAATGCCTT CAACAGAATC 
AATCAGAAGG GTAAAAGATT TGCCTCGTGA AGGTCTTCAT CCAATTTTCA 
GGGACGTACT TGGGTCAGAT GAGCTTTCAG CTCTTGCATT CTCGGAACGC 
TTGAAATCAT TTCGGCCGAA GCAGACGATT TTAGAGGCTG AAGGTGAAGC 
TGCTAGGGGT TCAAATCAAT GGCTAGATGT GATGAAGAAG AAAAGAGAAG 
TGCATGAGGG AATTATAAAT TTAGTACATC AAAAGAATAA TGTTGATCAT 
GAGCCAAAGG AAGAATTGGT AGAGAATATT TCAAACTGGG AGAGAAAAGA 
TGTTTGTGGT AATAAGCGGA AGTTACAGAG CTTTAGAGAT GAGGAATACT 
ACATAAGTTC AGTGCCTCAA AACCAACATT TGGAAGCTGG ACTGTCAGTG 
AGGGCCAACG AAGGATTTGT TGAAAATAGA TTGGATGCTG CTGTTCTTGA 
TCTAGTTGAT GATGAAACTT CTGGTATGCA AGCACAGAAA ACTCGATATC 
ACTGGAAAAA GAACAAGTTT GTCAAGTTAA ATAGTGGGGA TCGTGTCACT 
GCCACAGGAA AGATTAAGAC AGAAAGTGGT GCGAAGTTAA AGCCAACAAA 
AACGGGGATA TACAAGAAAT GGCAACAGAA GACACATAGA TCTATCGATA 
CTGGTAGAAA ATTTGGTGGC TTTGCAGAAG AGGGTGCATC CACGACAGGT 
AGCCATCAAA GAGGAAACAG AAAACACACT GCAGTGGGAC GGGGGCGTCG 
CTATATACCG AACGCCGACG TACCGTCTGA GATTAGAAAT CCCGAACAAA 
TACAGAAGAG CAGGCAGCAA AAAGCAATGG ATATTGCCCG CATGAAGAAC 
AGATCCACAA AAGAGAGTAA ATTCCAGAAA TTCCAGAAGA ACAACAGGAG 
GCACGATGGA CCCTTGAAAG ATGGCAAATT CCAGAAGAAC AGGAGACCGG 
ATGGCAATGG AAAGAACAGG AGACCGGATG GAAATGGAAA GGGACGGGGG 
AAAGGCAAAG GAAATGCAAA TGGATTTGGT AAAGGGAAGG GAAAAATGAA 
AGGGAAGGGC ACAAGGTGAT TTGACGAAGA AAATGTTATC CAAAGCACAG 
GAGAGGGGCT GCTGCGCTAT CAACAGCAGG TGCTGTTTGC CTTCTCGTGT 
ATTCCAGTTT TGTTTGCTTT CCTAATCGTT CCTCTAATTG TAATTCAAAG 
CATCCGAGAT CTTACCGAGA ATATACTCGT TCGCGTTACT AATTTAAACA 
TTGGATAGTT TTGTC

Gene models with high sequence identity

AT1G77030.1 [+] show detail - hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicase...
E-value: 0; Score: 891.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	DEAD-BOX PROTEIN 54	1.5e-237
HMMPanther	DEAD BOX ATP-DEPENDENT RNA HELICASE	1.5e-237
HMMPfam	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	7e-48
HMMPfam	DNA/RNA helicase, C-terminal	5.5e-17
HMMPfam	DBP10CT	1.2e-15
Gene3D	no description	1.7e-62
Gene3D	no description	1.9e-35
BlastProDom	DBP10CT	4e-46
HMMSmart	DEAD-like helicase, N-terminal	4.6e-54
HMMSmart	DNA/RNA helicase, C-terminal	2e-19
ProfileScan	Helicase, superfamily 1/2, ATP-binding domain	30.497
ProfileScan	DNA/RNA helicase, C-terminal	19.581
ProfileScan	RNA helicase, DEAD-box type, Q motif	10.345
superfamily	P-loop containing nucleoside triphosphate hyd	1.8e-56
superfamily	P-loop containing nucleoside triphosphate hyd	4e-43

See the detailed result >

AT1G77030.1

Model type: Protein coding
Short Description: hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases
Computational Description: hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DBP10CT (InterPro:IPR012541), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 42888 Blast hits to 42073 proteins in 3063 species: Archae - 831; Bacteria - 21864; Metazoa - 5973; Fungi - 4375; Plants - 2654; Viruses - 31; Other Eukaryotes - 7160 (source: NCBI BLink).
Link: InterPro Scan - TAIR