K32317

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32317

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32317

Determination of introduced cDNA(s)

  • J013159E06 - Rice Full-length cDNAs - Original: J013159E06

    full reading [+] show sequence

    Nucleotide sequence: J013159E06 - full reading 
    GGCCGTTTCC TCTCCACTTC CGCCCCCATC TCCGCGTGCG GAAGTCAACG 
    AAGCGGAGCG CCTCTGCCGC CTCTCCTTCC CACCCACCTC TGCTCTGCTC 
    CTCATCGTCG TCGCGCGGCC AGCTCAGCCG GCCGGAGAAT CCACCGAATC 
    CGGCGCGAAT CCCGCAGCCA TGTTCGGCGA CTCCGACGGA TCCAAGGACG 
    CCAACCCCGG GGCGCCGCCC TCCACCACCG ACCCGCCCTT CCCCAACCGC 
    GAGCTCACCC TCAGCAGCTA CCTCTGCGAG AAGCCGACGC TCGCCTCCGC 
    CGCCGCCGGT GGCGGTGGCG GTGCCGGCCC GTCCTCGCCG CCGAACCCTG 
    CTGCAGCCGC GGCTGGCGAC GACGGCAAGC ACTGCGTCGA GCGCGACTTC 
    CTCCACCTCT CCGCGCCCAA GCGCGGGGAT CCACCCGGCG ACGACTCATC 
    CGTCGTCGGC GGTAAGAAGC CCCGCCTCGA CTCCCTCCAG CTCTCGCTGT 
    CCCTTAACTC CGACGGCCCC GCTGCTCCGC CGTCGTCCCA GCCGCCGCTC 
    GCCTCGCTCC TCCAGCCCGT CCCCGCGACC GATGGAGATC TACGGGGAGC 
    GGCGGCGGCG GCGGCCGTGC CCGCGGCCCC CGCCAGGAGG ACCTACAGCG 
    CGACGACGGC GCGCACCCGC AGCATCAACT CCGACGACAT GTCCTACTCC 
    TACTCCATCT TCTCGCACAA CCCTAGCTGT TCCCTCACGC ACAACTCCAC 
    CGACATCTAC GCCGCCGGTG AAGGTACCAA CGGCTCCGTT CACAGCCGAT 
    TCAATTTCCG CCCCATGGGG GACGGCAGCG TCGCCTTCGC CACGCCGCCG 
    CTGAAGGAGG GCACGTCGTC GTTCTTCCCC ACGGAGCTCC CTGCGAGGAT 
    GGCGGCGGCG GCCGCGGCGG CTGCTGCCAG CGCGGGTGGC AGCTTCGACG 
    GCGGTCGCGG TGGGCTTCAC GCGTCGCGCC CTGACAAGAT CCTGCGGGAT 
    ATTGTGTCCG ACTCTGTGAC GGCTATGGCG CAGGTGCTGC AGGATTTCCC 
    AAGCGAACGA CTGGAGTTGC TGCGAGAGGC AGTGCGGGGC ATGATTGACT 
    CTCATGAGAA GAGGGATGAG CTGGCCAGCC TGCAGCGGAA GCTTGAGCGC 
    CGGTCAGACC TGACCACCGA GACATTGGGG AGGGCGAACA GGACGCAGCT 
    TGAGATCCTG GTGGCCATCA AGACTGGAAT CGCGACGTTT GTCACCGGTA 
    AAGGCCGGGT ACCAAGCAGT GAGCTTGTAG AAATGTTCCT CATGACACGG 
    TGCCGCAACC TGAACTGTAA GAGCACGCTG CCAGTGGATG ACTGCGATTG 
    CAAGATTTGC TCCACCAAGA AAGGGTTCTG CAGCGCATGC ACGTGTTCAG 
    TATGCCACAA GTTTGACTGT GCTGCAAATA CCTGCACCTG GGTTGGGTGT 
    GATGTCTGCG GACACTGGTG TCATGTTGCA TGCGCGCTGG AGAGGAATTT 
    AATCAGGCCA GGGCCGACGC TGAAGGGGCC AATTGGGACG ACTGAGATGC 
    AGTTCCAATG CCTTGCTTGC AATCATTCTT CTGAAATGTT TGGATTTGTC 
    AAGGAGGTGT TCAATTGCTG CGCAGAGAAC TGGAATGCTG AGACTCTGAT 
    GAAAGAGCTG GATTTTGTTA GGAAGATATT TGCTGGTTGT GAGGATTTTG 
    AGGGCAAGGG GCTTCATGCC AAGGCTGAAG AGGTCCTCAG CTTGCTTGGA 
    AAGAAAATTA TTTCTCCTTT GGATGCAACA AACAGTATCT TACAATTCTT 
    CAAATATGGA GTTACAGATT ATTCTGTTAC TGGTAGCACG TCCAAAGGTA 
    TATTGGCAGC TCAGGCAAGT CAATCTACAG ATATGCGGTC TCTTCAAACT 
    CCAACGATCA CACCACCGAA ATCCTCATTC AACTTCAAGA CCACTACTTC 
    CATTCTTGAC ACCGATGCAC TTAAGCCCAG CCCAAAGCCA CTCTCTATTG 
    AACCCCATTT CAGCACCGCT TCTAAGGAGG ATGACTCTAG CCTCGAAACC 
    ATCGTGAAAT GCAAGGAAGC TGAAGCAAAA CTCTTCCAAA AGTTGGCCGA 
    TGATGCCAGG AAGGAAGTAG ATAGCTACCG CCAGATTGTC CGCTCCAGGA 
    CTCAGAAGCT AGAGGAGGAG TATGCTGCGA AGCTGGCAAA AGTATGCTTC 
    CAAGAAACAG AGGAGAAGAG GAGGAAGAAG CTGGAGGAGC TCAAGATGCT 
    GGAGAATTCG CACTACGACT ACCTCAAGAT GAAAATGCGG ATGCAGACCG 
    ATATCCAGGG CTTGCTCGAG CGGATGGAAG CCACAAAGAA GATGTGGGTA 
    TAGGCTGGTA AAAATTCATC TGACGCCGCT GAATGTGTGA AAAATCTGTT 
    GTACACCATT AGGATGTTTT CCGAGTTGTT GTATTCATCC TGTGATTTGT 
    GTTACCAGTT AAAACTGTTA TAAGCAGAGG GCCGCCTAAC CTCGTGCTGG 
    CAGATAACAT AACTAGACAC CATCTCATTT

    Gene models with high sequence identity

    1. AT1G14740.1 [+] show detail - Protein of unknown function (DUF1423)
      E-value: 6e-147; Score: 518.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1423, plant 2.1e-184
    FPrintScan Protein of unknown function DUF1423, plant 3.4e-60
    FPrintScan Protein of unknown function DUF1423, plant 3.4e-60
    FPrintScan Protein of unknown function DUF1423, plant 3.4e-60
    FPrintScan Protein of unknown function DUF1423, plant 3.4e-60
    FPrintScan Protein of unknown function DUF1423, plant 3.4e-60
    FPrintScan Protein of unknown function DUF1423, plant 3.4e-60
    FPrintScan Protein of unknown function DUF1423, plant 3.4e-60
    FPrintScan Protein of unknown function DUF1423, plant 3.4e-60
    HMMPanther MLP3.23 PROTEIN 2.2e-182
    HMMPanther VERNALIZATION-INSENSITIVE PROTEIN 3 2.2e-182
    PatternScan C-type lectin, conserved site 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPIR Protein of unknown function DUF1423, plant 1.4e-163

    See the detailed result >

    AT1G14740.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1423)
    Computational Description
    Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT3G63500.1); Has 415 Blast hits to 414 proteins in 82 species: Archae - 3; Bacteria - 32; Metazoa - 64; Fungi - 8; Plants - 255; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR