K32336

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32336

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32336

Determination of introduced cDNA(s)

  • J033071L22 - Rice Full-length cDNAs - Original: J033071L22

    full reading [+] show sequence

    Nucleotide sequence: J033071L22 - full reading 
    GGACGTTGCC GCCTCCGCCT CCTCCCCCTC CATCGCCGGC GGCCGCTTCT 
    AGCCGGAGAG AAGAAGGCAT GCCGCGGACG AGCGTGGTCG AGAGCCCCGG 
    CTGCCCGCCG CTCCGGGCCC TCACCACCGA CATCCTCGGC CTCATCAAAG 
    TCGTGGAGGC CCGCACGAAG CCGGCGGGCG TCGCCAAGGT CGTCGAGACG 
    TGGGGCGCGC CCGACGCGCC CCGCGCCGTC CTCGCCGCCT CGCTCGCCGA 
    CCGCGCCGTC GACCCCGTTT TGGCCGTGGC GCGGAAGAAC GGCGTGGTTG 
    AGCTGCTGAA TCCACTGAAT GGGGAGACTC TCGCAGGCGT CAACGCTGCT 
    GCTGGGCGGG CGGCACCGGC TGATAGTTCT GCAGAAGAGG ACCCCTTAGC 
    CACGCTGCAT CTCTTCAGAA GACATGCGCT GGACTCATCC ATGTTAGGCA 
    CATTTCTTGC TTGTACAGAG AAGGGGAAAG CATATGTCAA GTCTGTCGCA 
    AAGGAAAATG CATCCTCGGA CATGGCTGTT GGGCCATCAA GCTCATGGGA 
    TGTGAGCAAT TCGGGTACAG TGCAATTTTC TTCAGTGGAT GCTGGTGAAA 
    GCTACGCGAT GTTCGGAGGG AAAGGAATAG AAGTCAATTT GTGGGATATC 
    ACATCTTGTA GTAAGATATG GTCTGCCAAG TCTCCTCGAG GCAACAGTCT 
    TCAGATATTC ACTGCACCTT GGTTCACTGC TGGAACTTTT TTGTGCAAGG 
    ATGACCATCG TAAAATTGTA GCCTGCACAA ATAATCATCA GGTTCGCTTA 
    TATGACACTG CTTCCCAAAG AAGGCCTGTA ATTTCAGTTG ATTTTAGGGA 
    GTCACCAATC AAGGCAGTTG CTGAGGACCC AAATGGACAT GCTGTCTACA 
    TTGGTACAGG AAGAGGGGAC CTTGCTTCCT TTGACATGAG AACAGGTATT 
    ATATGATAGT AGCTGGTGTG TGATAATTCT TGCTGATGGC ACTTGGAAGT 
    CAAAATACAT TCTGAATTAT ATTTTCAGAG TTGTAGCTTA GTTTGAATTT 
    TGTATCTAGT ATACTATAGT TCAAATAAAA ATCTCTTTTC ATTTTCGTAC 
    TCTAAAGTTC ACTCTGGCAT GTGTATTTCA TTGTACTATT TTTTGGCTAC 
    CATGCTCTGA TGCTTACATA GGTGGTACAA CATTGGTTGT TTATTTATTT 
    TCCTGATCGA TTCATAGTTA GTTCATCATG TGCTATATGG ATACATTTAA 
    CTGCCTGGAG AAGTTTTATT TAAATTTAAC TTAATATTCT GCAATGAGCT 
    TATGCATCAT GCACTTTTTT GGAGGAACAG AGAAAACAAA TATGCATCTC 
    TGTGGGTTTC CAGGAACATC AACTGTGAAT CAAAACCTTC GGTTGAATAT 
    TCTTGCTAAA AATGCACCTC CTCAATTGAT TCCTGTGTAC ATCCCTCAAC 
    TATAGCATGA ATAAAGTTGT GCTGTTATGG TTCTTGTACT AACCTGAGCA 
    AATATGCCAA CAAATTTTCA GGGGATTTGA GACTACTAAA CTATCTGTGA 
    GTGATATTGA AATACCAGAT AAATTGGTTT CAATTCAGGC GTTAGAAAGA 
    TATCTTGTTC ATGTCCCTTA TCAGATATCA AAAGATGTTT GATTATTGTA 
    TGCTTACAAC ATTCTAGATT ATATTCTATG TAAATTCCTT ACACTTTGCA 
    ATCGGTATTC ACTTTTTAGT TCTTTTTAAT GTATCTATTT ACAGAATTAA 
    CTTTAGCTTG CACCCTTTTC CCAGGAAAAC TACTTGGTTG CTTTGCTGGT 
    AAATGCAGTG GAAGTATTAG ATCTATAGTT AGACATCCAG AGCTACCTTT 
    GATAGCATCT TGTGGACTGG ACAGTTACTT ACGCATCTGG GACACAAATA 
    CAAGGCAGCT GCTCTCTGCG GTCTTCCTCA AGCAGCACCT GACAGCTGTG 
    GTTATTGATT CACATTTCTC CACTGAAGAA CTCGAGGAGA CTAAATCCAA 
    GCAGCCAGAT CCAGTTGGGG CAGAAGTTAG AAAGGAAAGA AAGGAAAAGA 
    AGAATAGAAC GAGTGAAATG GATGAAGACG AAACTAGAAT GCTCGACCAT 
    GATGACAGTG ATTCTGAAAT GCACACCTCA AAGAGAAAAA AATCTGGTGA 
    AAAAAGCAAA GGAATGAAAA AGAAAAGCAA GAAGCAGCAA GTCGCATAGA 
    TAGGACACAC AACACTGGAG TCAGTGTTGA CCAGTTTTGA CTTTTTGACT 
    AAGGTGCTTT GCCCTTCACT CGATTTTGTA CAATGAATAT CATTTGTATT 
    AGAGTTTATT CGAACTCGAA CAATAGCACT TATCTGGATT CTCAATTCTT 
    CAAATACTTG CCGGGCCAAT TAAGTATTTT ACTATGCCTT CTGAGCAATA 
    TAAAAGAAAT GGCGTATTAT CACCC

    Gene models with high sequence identity

    1. AT1G29320.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 3e-75; Score: 280.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40 repeat 2 9.205
    ProfileScan WD40-repeat-containing domain 8.887
    HMMPfam WD40 repeat, subgroup 5.1e-05
    PatternScan WD40 repeat, conserved site 0
    superfamily WD40 repeat-like-containing domain 3.9e-06
    superfamily WD40 repeat-like-containing domain 1.5e-07

    See the detailed result >

    AT1G29320.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 10050 Blast hits to 5411 proteins in 439 species: Archae - 25; Bacteria - 1235; Metazoa - 2837; Fungi - 1519; Plants - 647; Viruses - 46; Other Eukaryotes - 3741 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR