K32539

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32539

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32539

Determination of introduced cDNA(s)

  • J013159K24 - Rice Full-length cDNAs - Original: J013159K24

    full reading [+] show sequence

    Nucleotide sequence: J013159K24 - full reading 
    GATCGTCCTC CTTTCCGTAG CTGGCAACAT CTCCGCCTCT CCTCTCGCTT 
    CCCGCATCTT CCCACACACA CACACACAAA AAAAAAAACC TCACGCGCGA 
    TTCCAATCCT CCCTGAATCC ACCGCGCCTT TGCCTAAGGG TTTCGATTCG 
    TTCGCGTGCG GCTGCTCTCC CCCCGATCGA TCGGCTTCTC GCCTCGCTCT 
    CGACGAATCG AGGTCGCTAG CTCGGTTCGG TTGTGCGTTG CGTTGCGTTG 
    GCGTGGCGGC GGGCGGTTGA CCGGTTCGCT AGGGTTGGAG CTCCGGGAGG 
    GGGAGGAATG ATGGCGAGCC ACGGCGCCGG GGTGGTGGCT GCTGGATCCG 
    ATGCCGCTCC TGCCGAGGTC AGCATTGTGG GGCAGACAAA TCCATCTACT 
    TATCCACCTT TAGCTTTAGG GCATCATTCA TGGTCCTCTT CAACTGGGGC 
    AGCTACAGTC CCGTGGAGCT ATCCAGTGAA CAATCAAAGC CAAGATACAG 
    TTTACTATGA TCCACAAAGG GATGTTTCGG TTTCGGGAGA CAATCAGAGT 
    GTGGCAAGCA GTGCACCTCA TAATGCTCAG CCAACTATGG GCACAGAAAA 
    TGCGACTCAT TCTCACATGC CTTACTCAAG TTCACTTCAA CATGGGTACA 
    CTGCTGCAGA ATATGCAAAC TATTATTATA GTTACCCACA AACTACAAAT 
    GGTTCTTCTG TCCAGCAAGG AGGAACAAAT CAACATTCAG ACTGCTCCAG 
    GATATGGAAC TAGCAATAGC TATTATCAGA ACAGCACCTG GAATGGTGGA 
    AGCTTTGAAA ATAATTATGC TCAGTCATAT CAGAACTACC CGTCATCCAA 
    TACCAACACA GTACAGCATT CCATTTCAGT GCCTACCAAT TCTTTCTCAT 
    ACCAACAGCA GTACAACCAA TGGCCATACT ATTACAATCA CACCGTGCCA 
    AATCCTGCTG GTGATCCAGT CGGGAACAGT AACTCAATTG TTAACACTAC 
    TTCTAGCTAC TCCTATCCCA GTATCCAGCC ACCTCCTCCA GGAACTACAT 
    CATGGAAAAG TAATTCAAGT TCGTCTATTG CGCCTCCTAT TCAGGCTTCA 
    GGTGGTCCAG GGCCTCAAGA TCAATATATC AACCAGGCGC ACGCTCCGGT 
    GTTGGAAAAC CAGTATGCTG GCCAGGTAGC AGGTAACCCA AGGTCTCAAA 
    ACCATTATGC CAGCCAGACA CCAGCCTGCC CACAGAGCAC TGTGAATTTG 
    AACCCCGTTC AGCAAAGCAA TCATGGCGAT CAACAAAATA CTGTTCCTCG 
    AATTGCTCCA GGTTTTTCTA TGGTAATACC AAAGAGCGAG AAGAAAATTT 
    TAGGTGCTGA TTTGTCAAAG AAGCCTGCTT ATGTTAGTGT TTCCATGGTG 
    AAGAATGATG CTAGATCACT CCCTTTTTCA TTACATAATT ATGCTACGAG 
    GAATCTCAAC TGTTGCAAGG ATGAGGCCCA GAAGGCTGCT TGCCAGAGTA 
    TGATAGAAGA GATAAAAAAC AGCGCCATTG CTGATGGAAC CCTTCTTACT 
    AAGAATTGGG ACACTGAGCC ACTGCTTCCT TTGGTACAAA ATGTTGCAAC 
    CATTCCAGAA ACAAGTGCAA ACAATTCAAG TCCCTCCTTG TCGACATCTA 
    CCAATAGGAG ACGCCAAAAA AGTAGGTGGG AGCCTGTTGT GGAGGAAAAG 
    GTTACAGATA AGGTGGAACC GGTAAAAGGG TTGGTGAATG GTACCACCCA 
    CAATAATTTG GAAGCCAAAA ACAGAATGAG TAATAACTGG GATTCCAGAA 
    AATTTTTCCA GTCTCATCAT GCGACTGCAA ACAAAGTCAG TCAGCGGCCT 
    GCCAAGAAGC AAAAGATCAG CAGTTACTCA GATCAAATGC AAAATGGAAA 
    TGCTTCAAGT GATAGTGATA AGGAGCAGGA TCTAACCAAA TATTATGCCA 
    GTGCAACCGC ACTAGCAAAT TCACCTGAGG AGAAGAAGCG CAGGGAGCAT 
    AGGTCAAAGC GTTTTGAGAA GAACCAGAAT TCATCATCTA AATCGAGGAA 
    TTCTGCAGCA AGTAAAGATG TAATGGCTAA TATACATGCA CGAAGAGCTG 
    TTTCAGCTCT TCTTGCCAGA AGCTGTGAAG ATGGCACTAC CTTGGCTGTG 
    GAGGATATGG ATTGGGATGC ATTGACAGTA AAGGGGACAT GCCAAGAAAT 
    TGAGAAACGA TATCTCCGGC TTACATCAGC ACCTGATCCT GCCACAGTAA 
    GACCGGAGCA TGTCTTGGAG AAGGCCCTTT CCATGGTTGA AACATCTCAA 
    AAGAATTATC TTTATAAATG TGATCAACTG AAGTCTATTC GCCAAGATCT 
    CACAGTTCAG AGAATCCAGA ATGAACTTAC TGTCAAGGTT TATGAAACTC 
    ATGCACGTTT AGCAATGCAG GCAGGTGACC TACCTGAATA TAACCAGTGC 
    CAGTCACAAC TGAAGAGGCT ATATGCAGAG GGAATCAAGG GCTGCTACTT 
    TGAATTCTCT GCGTACAATT TACTCTGTGT CATGTTGCAC TCTAATAATA 
    AACGAGACTT GCTGTCATCA TTGGCAAGGT TATCGAAACA AGCCAAACAA 
    GATGAAGCTG TCAAGCATGC CCTTGCAGTT CATTCTGCTG TTTCATCTGG 
    AAACTATGTC CTATTTTTCA AACTATACAA GCAGGCACCG AACTTGAATT 
    CTTGCCTCAT GGATCTATAT GTGGAGCGAA TGCGTTTTGA GGCTGTAAAA 
    TGCATGTCTA AATCATATCG CCCGACTATA CCAGTGGGAT ATGTTGCACA 
    AATTTTGGGA TTCTCAAGAA TTGATAGTGA AGCATCAGAA GAGTGTGAAA 
    TGTGGTTAAA AGCTCATGGT GCTATTCTTT CAATAGACAA CAGCAGAGAC 
    TTGCAATTAG ACACGAAGGC TTCTACTACT ACACTTTACA TGCCAGAGCC 
    AGAGAATGCC GTCGCACATG GTGATGCCTC ACTTTCAGTT AATGACTTTT 
    TGGCGCGGAC ATAGCGACAA AAATTGTAAC CATGATAGAT AAGTCCAGTA 
    TGTTTGTGCC GATCTGTGAG CCTGTG

    Gene models with high sequence identity

    1. AT2G39340.1 [+] show detail - SAC3/GANP/Nin1/mts3/eIF-3 p25 family
      E-value: 6e-151; Score: 532.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8 2.2e-112
    HMMPanther 80 KDA MCM3-ASSOCIATED PROTEIN 2.2e-112
    HMMPfam SAC3/GANP/Nin1/mts3/eIF-3 p25 1.8e-59

    See the detailed result >

    AT2G39340.1

    Model type
    Protein coding
    Short Description
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family
    Computational Description
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR