K32550

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32550

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32550

Determination of introduced cDNA(s)

J013158I15 - Rice Full-length cDNAs - Original: J013158I15

full reading [+] show sequence

GGTCTTTGAG GCCATCGGCA GCGAAAGCGA CTTGGTCGAG ATTATAGGTC 
TGGTTGTAGA GCATGTTGCG CTGTTCTTCG TACCTTGAAA CAGGCAACGT 
ACATTCATCA GAGTTGCATA GTGGAGTAGT AGCAAATACT CTACTAGTAG 
TAGAATAGTG AGTAAGAGTA GAGTAGAGTA CATGCGCTTG TGCTTGAGAA 
GCCTGATGGC GCGGGCCTTA ATGGCGTCCT GGGAGGGTCC AGGGCGTGTC 
TTCCTGATCT GCTCCTTGTA ACGGCCGAGC TCTTCGTCCA GCTTCTTGAT 
CTTGTCGTCC ACGCTCTCCC CCCTCTTGTT GATCTTCAAT CACATACACA 
TAGAGAGGAA ATGTTCAAAC TAAGAGAGAT GGCGTGCGAG CAAATGGCCT 
AGACGAGGAG AATACTCGTT CGGTAGCGTC CTGGATGGAT GGGGCGGGTC 
CTTGCTCTTC TTGGCTCCAA AGATCTTCTT CATTTCCGGC GCGTGTGTGC 
GGCGGCGGCG GCGGCGGCGG CGGCAGCGGC AGCGAGGAGA GAGAGTGTTG 
GGAGTGAGAT GAGATGGAGA AGGGGAATGG GGGACGGGAG GTTGGGCTCC 
ATGCTGAATT CTGCTGTGGA TTGGTCCAGG GAAGGCCCTA TCCGGCATAC 
CATTAATCGG ATTTGATTTC ATTCCCTTTC TCCTCCTTAG TCATACTCCC 
TCCCTTCCAT ATTTGACTTA TTTTTTCTTA GTTAATTTTT TAGCTTGATC 
AAATTTATAG AAAAACTAAA CACTATCTAT GACATCAAAT TATTTTTATT 
AAATGTAGCA TAAAATACAT TTTGATAGTA TGTTTGTTTT CTGCT

Gene models with high sequence identity

AT3G10640.1 [+] show detail - SNF7 family protein
E-value: 2e-26; Score: 50.40

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Snf7	2.6e-07
Coil	coiled-coil	0

See the detailed result >

AT3G10640.1

Model type: Protein coding
Short Description: SNF7 family protein
Computational Description: VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 1147 Blast hits to 1145 proteins in 230 species: Archae - 3; Bacteria - 8; Metazoa - 447; Fungi - 307; Plants - 230; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Link: InterPro Scan - TAIR