K32622

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32622

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32622

Determination of introduced cDNA(s)

  • J013037N20 - Rice Full-length cDNAs - Original: J013037N20

    full reading [+] show sequence

    Nucleotide sequence: J013037N20 - full reading 
    GAACTGATCA TCAGAAGGTA CAATCAATCA GTCAAGCAAT CCGGCGTTAC 
    AGCTGGCTCG TCGTCTACGG CGCCGGCGTA AACTGCAGTT TATAATCATC 
    TCCTCATCTC ATCTCCTGCG ATAGATTGAG TTGAGCCTGA TCCCGTCTCT 
    ACTTTCTCCT CTCCAGCCTC TCGAAAGCTA GGTCGATCTT CAGTTATCTC 
    TCTCCAGAGA GGAGATATTG GTAAAACGGA CAAGTTACAA ATTCAGCTAT 
    GAATCCAACT AATGTAGCAT ACCAATTGTT AGAAGAAATT ACAGATGGAT 
    TCTCTGAGGA GCGAAAGCTT GGTGAAGGTG GATATGGAAC AGTTTACAAG 
    GTAAGTTAAA GGGAAAGCAT AAAAATGGAG ATAAAATTGC AGTAAAGATT 
    CTTCATGATA CGCAAGATTT TGACGACAAG AAATTACAAA ATGAGTTTGG 
    GAACCTTATG ATGGTCAACC ATCCAAACAT TGTACAGTTA GTTGGATACT 
    GCTATGAAAT AAAACATACA CATGGACAAG TCAAAGGAAG ACCAGTTTTG 
    GTTGCAACAA TACATAGAGC ACTCTGCTTC GAGTATATGC CTCGGGGGAG 
    CCTTGAAAAC TATCTTTCTG ATAAAGTTGA TGGTCTTGAT TGGCCTATAC 
    GGTACAAAAT TATTAAAGGG ACATGTGAGG GTTTAAAACA TCTTCATGTG 
    GAAATGAAGC CACCTATTTA CCATTTGGAC CTAAAGCCTG CCAATATTTT 
    GCTAGACAAC AACATGGTGC CGAAAATTGC AGATTTTGGT TTGTCCAGGT 
    TCATCACTAA AGACAAAACC ATGACTACAA AAACTCTTGT TGGGACAATC 
    CCATACCTGC CACGAGAATA CATAGAGAGG AAAGAAATAT CAAACAAGTT 
    AGACATATTC AGCTTGGGCG TTGTAATGCT AGAGATAATT GCTGGACCTG 
    GACCTACAGG ACACTTCAGA AGCACCGAAA TTCCTTCTCA AGAATTTACC 
    GATCAAGTAA TCAGGAGTTC AGAACCAACG TTTATTTCTA ACTAAACTAC 
    TCCCTATTTA TTTCTAACTA AACTTCTCAA TCTGTTTATT TTTTTATGGC 
    GTTTGTTAGT TAAAAATGAA CTAACCAACA TCAAACATTT TAGAACTGAG 
    GAAATATTTT ATTTCGTTTG AATAGTACTT CATCTTTTAT TCTGATTGCA 
    CAGGTACTAG GGAATTGGAA AACTAGGTTA GAGACAGGAA GGAATGGTTC 
    CCTACTGGAA GCATATTGCC AGCAAGTGAA GACATGCACC GAGATAGCGC 
    TGAAATGCAT GGAGACTGAT AGGGAAAATA GGCCTAATAT AGTGGAAATC 
    ATCAATCAAA TTAACGAGAA AGAAGCTATC ATTGGTGAGC TGCCGATAGA 
    CCATGCCTTG GAGAAGCTAC CCTCACACAA CAACGAGTCT GTCACTCTTG 
    AGAGCAAATT GCCAAGCCAT TTGAACTTAA ATGAGACCAA AGAAAATCAT 
    GAAGCCGATC ACCATAACAG TTCTTGTTCC AAAGAGAAAG AGGAGGACCG 
    AGAGGAAGAT CAGATCATCC CAATGGAACA TCCTGATTTT CCAATAGATG 
    TGCATCCATC GGAACCATGG ATCTTGACGA GCAATATGTT TGGCTCAGTT 
    GACATCTTGA ACTATAATAC GCTTGAAACA AGGAACCTGA TTCAAGGCTC 
    ATATGGACCA ATAGTTACTG CAGCCAAGTT CATCGCGCGA AAGCAATGGT 
    TCGTGGTTGG ACATCACGAT GGTTTCATAA GAGTTTACAC ATATGAGTCC 
    CCAGTAAAGC AAGTGAAGAG ATTCAAAGCT CATGCTTGGA GTTGGACCAT 
    CACAACTTTG GATGTCCATC CAACTGAGCC TTACCTACTG TCAGTAGGCT 
    CACAAGACCA GATCAAGCTG TGGGACTGGA ACAAGGACTG GGAGTGTATC 
    AGGACATTTG ACCCCCATGG CGTAGCATAT CAAATCAAAT TTAACCCAAA 
    AGATACACAT AAATTTGCTG TTGCAAGCTT GATGGATGCT CAGGTTTGGA 
    ATATACGTTC TTCGCGTCAT GAATTCACAC TGTCTGGGCA TGTATCTATA 
    GTGGATTGTT TTGATTTCTT TACTCGAGGC AATCAGCTGT ACATGATAAC 
    TGGTTCATGG GACAAAACGG CCAAGATCTG GGACTGTCAG AGAAGGACTT 
    GTGTTCAAAC ACTTGAAGGA CATACGGATT GTATCACCTG TGTTTGTTCC 
    CATCCAGATC TGCCAATCCT ACTCACAGGT TCAAATGATG AGACAGTTCG 
    TCTGTGGAAT GCCACTACCT TCAAGCTGGA AGGTGTACTG GACTTTGAGC 
    TCGGCAAAGT TACTGCTATA GTTTGCTTAA AGGGTTCAAA ACGAGTTGCG 
    ATTGGACATG ATGCTGGATT AGTGATTACT GAAATTCGTC ATGGAAAGCC 
    TGCTCCCAGC AACAGATAAG GATATTCAAA CTGTTGGTGT CAAGTAGGCA 
    AACTGGAGTG GAGACAGATA ATGGTAGTGC GCTTAATTAG CTCATTCAGA 
    ACACCGGTTG AACAATGTTT TGACACTTAG ATAACCAAGA TCTGAAATTC 
    GGAGGTAACA TGGGAAAAAA AAATTTGTAA TCTGATGTAG TGGATATTAC 
    CTACATTAAG CATACAAAGT TTGTTTTTTT TTCTCATCCC TTTTGCAGTC 
    CAGTGTTTTT TGTTATGAAT TAACAGTCCC AGTGTATTCT G

    Gene models with high sequence identity

    1. AT1G52360.2 [+] show detail - Coatomer, beta' subunit
      E-value: 2e-71; Score: 267.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPanther PTHR23258 2.30000440726539e-57
    Gene3D G3DSA:3.30.200.20 0.000259999946718996
    Gene3D G3DSA:1.10.510.10 4.30000170645879e-37
    superfamily Protein kinase-like domain 2.7e-51
    HMMPfam Serine/threonine-protein kinase-like domain 1.2e-36
    ProfileScan Protein kinase, catalytic domain 0
    HMMSmart WD40 repeat 7.6
    HMMSmart WD40 repeat 0.0026
    HMMSmart WD40 repeat 19
    HMMSmart WD40 repeat 4.6e-05
    HMMSmart WD40 repeat 2.8e-11
    Gene3D WD40/YVTN repeat-like-containing domain 5.9e-47
    superfamily WD40 repeat-like-containing domain 1.4e-51
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    ProfileScan WD40 repeat 2 10.174
    ProfileScan WD40 repeat 2 13.917
    ProfileScan WD40-repeat-containing domain 26.235
    HMMPanther COATOMER BETA SUBUNIT 4.7e-90
    HMMPanther COATOMER 4.7e-90
    HMMPfam WD40 repeat, subgroup 0.041
    HMMPfam WD40 repeat, subgroup 4.7e-05
    HMMPfam WD40 repeat, subgroup 3.5e-12
    FPrintScan G-protein beta WD-40 repeat, region 1.5e-05
    FPrintScan G-protein beta WD-40 repeat, region 1.5e-05
    FPrintScan G-protein beta WD-40 repeat, region 1.5e-05

    See the detailed result >

    AT1G52360.2

    Model type
    Protein coding
    Short Description
    Coatomer, beta' subunit
    Computational Description
    Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3).
    Link
    InterPro Scan - TAIR