K32637

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32637

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32637

Determination of introduced cDNA(s)

  • J013091L23 - Rice Full-length cDNAs - Original: J013091L23

    full reading [+] show sequence

    Nucleotide sequence: J013091L23 - full reading 
    GCCTCTCACG TCTCACCCAC ACCTACCCAA TCTCCCGGTG CGCAGCGGCG 
    AGCGACATGG AGCTCCGCGA GCTCGGCGCC ACGGGCCTCC GCGTCAGCCC 
    CGTCGGCTTC GGCGCCTCCC CTCTCGGCCA TGTCTTCGGC GACGTCCCCC 
    GCGACGTCGC CCGCGCCGCC GTCCGCCGCG CCCTCGACCT CGGCATCAAC 
    TTCTTCGACA CCTCCCCGTA CTACGGCGGC ACGGTGTCGG AGTCGGTGCT 
    CGGGGACTGC CTCCGCGCCG CGGGCGTGCC GCGGGACCGG TTCGTGGTCG 
    CCACCAAGTG CGGGCGCTAC AGGGAAGGGT TCGACTTCAG CGCCGCCCGC 
    GTCACCCGCA GCGTCGACGA GAGCCTCGCA CGCCTCGGCC TCGACTACGT 
    CGACATCCTC CACTGCCACG ACATCGAGTT CACCGACCTC GACCAGATTG 
    TGAATGAGAC GATTCCGGTG CTCCAGAAGA TCAAGGAGAG CGGGAAGGCG 
    CGGTTCATCG GGATAACCGG GCTGCCATTG AGCATCTACA CTTATGTGCT 
    CGACCAGGTG CCGCCAGGTT CTGTGGATGT GATTCTGTCT TACTGCCACT 
    ATGGGATCAA TGATACCGCG CTTGTGGATT TGCTTCCCTA CCTGAAGAGC 
    AAAGGTGTTG GCGTGATCAG TGCTTCACCT CTTGCAATGG GGCTTCTTAC 
    AGATAACGGG CCACCCGAAT GGCACCCTGC ACCGAAAGAA CTAAAGTTGG 
    CATGCAGGGC AGCAGCAGAT CACTGTAAGA AGAAAGGGAA AAACATTACA 
    AAGCTAGCTA TGCAGTACAG CTTGATGAAC AATGAGATTT CCACGGTTCT 
    TGTTGGAATG AACTCTCCAG AACAGGTAGA GGAGAATGTG GCTGCTGCAA 
    TTGAATTGTC TACTTCCGGT ATTGATAAAG AACTTCTGCA CGAAGTTGAA 
    GCAATTCTTG AGCCTGTCAA GAACATGACC TGGTCCAGTG GCATTGAGCA 
    AGCCTGATAT CTGGCAGCAG CCTGGCTCAT TATAATTCAT TCATGTATTC 
    ATTGAGTCAA TTGTTTGCAT TGCAATATTT CAATGGTGAG CAAAGGAAAG 
    TCATCATCGG AAATTCGTTG GTATGTTGTC TGTATCAATT TAGAAGTCTG 
    TGAATAGACA AACAGCCAAA CATGGATGCT GATAATAATG GAATAAGTTG 
    TGCCCATGCA CCTTGCTGTA ATGAGGCTTG TATATTGCTT CAACTACAAA 
    CTGTACCAAA AAACAAATTG CAAACCAATA ATTTGCCGAT GCAAAAGGAA 
    ATACC

    Gene models with high sequence identity

    1. AT4G33670.1 [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
      E-value: 4e-129; Score: 458.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ALDO-KETO REDUCTASE 2.5e-101
    HMMPanther Aldo/keto reductase 2.5e-101
    superfamily Aldo/keto reductase 6.4e-72
    Gene3D Aldo/keto reductase 2.7e-67
    HMMPfam Aldo/keto reductase 1.1e-63

    See the detailed result >

    AT4G33670.1

    Model type
    Protein coding
    Short Description
    NAD(P)-linked oxidoreductase superfamily protein
    Curator Summary
    Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis
    Computational Description
    NAD(P)-linked oxidoreductase superfamily protein; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60750.1); Has 28637 Blast hits to 28630 proteins in 2499 species: Archae - 653; Bacteria - 20546; Metazoa - 1049; Fungi - 1796; Plants - 827; Viruses - 0; Other Eukaryotes - 3766 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR