K32641

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32641

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32641

Determination of introduced cDNA(s)

  • J033070J12 - Rice Full-length cDNAs - Original: J033070J12

    full reading [+] show sequence

    Nucleotide sequence: J033070J12 - full reading 
    GGTTCCTCAG TTCGGTACTT CTTCTTCCTT CACTCTCCCC ACCAAATTCC 
    CCCAAATCGC AGCTGTTCGC CACCCGCATT GCGCCGCCAT TGCCTCCAAA 
    TCCGAGTACT CCTTGAGTAA TCTCAGATCC ATCTCGGGTT CCTCCCGCCG 
    TTGGCAGCAG CCGGAGCTTT TTTCCGCGGA AGAAATGGCG CCGTTTCGGT 
    GAGTTCTTGG CAGTTTGGGA TGATGCTTGG TGGGTAGGAG GACTAGGAGT 
    GCGGCGGCTC GGGGAGAGGC TGCGATGGAG AGCGCCGCCG GGGAGGAGGG 
    GAAGGCTGCC CCGTCGCTTC CCCTGGCGAC CCTGATCGGC CGCGAGCTCC 
    GCGGCGGCGG CTCCGAGCGG CCGCTCGTCC GGTACGGCCA CTTCGGCTTC 
    GCCAAGCGCG GCGAGGACTA CTTCCTCGTC AAGCCCGACT GCCTCCGCGT 
    CCCGGGCGAC CCTTCCTCCG CCTTCTCCGT CTTCGCCGTG TTCGACGGAC 
    ACAATGGCGT GTCGGCGGCG GTGTTCAGCA AGGAGCACCT GCTGGAGCAC 
    GTGATGAGCG CCGTGCCGCA GGGCATCGGC CGCGACGACT GGCTGCAGGC 
    GCTGCCGCGC GCGCTGGTCG CGGGCTTCGT GAAGACGGAC ATCGACTTCC 
    AACGCAAGGG GGAGGCATCA GGGACGACAG CGACGCTGGT CGTCGTCGAT 
    GGGTTCACGG TCACGGTGGC GTCTGTTGGG GACTCCAGGT GCATATTGGA 
    CACGCAGGGC GGTGTGATCT CGCTGCTAAC CGTGGACCAT CGTCTCGAGG 
    AGAATGTAGA GGAGCGGGAG CGCGTCACCG CGAGTGGAGG GGAGGTCAGC 
    CGGCTCAACC TGTGTGGTGG ACAGGAGGTG GGACCTCTCA GATGCTGGCC 
    AGGTGGATTG TGCCTTTCAA GATCGATTGG GGATACTGAC GTTGGGGAGT 
    TCATTGTGCC AATTCCACAT GTCAAGCAAG TGAAGCTATC AAATGCTGGA 
    GGGAGGCTAA TAATTGCATC AGATGGAATT TGGGATGCAC TGTCCTCAGA 
    AGCTGCTGCT CAGGCATGCC GAGGATTGCC TGCAGAGCTG GCTGCAAAGC 
    TTGTCGTGAA GCAAGCACTG AAGACAAGTG GGCTGAAAGA TGACACCACC 
    TGTGTGGTTG TTGATATCAT CCCATCTGAT CATTCTTCAA CACCTCCATC 
    ACTATCTCCA AAGAAAAACC AGAACAAGTT GAGATCTCTT CTTTTTGGTA 
    GGAGGTCACA TAGTTCTGTT GGAAAGCTTG GAAACAAGTC TGCTTCATTT 
    GACTCTGTGG AGGAATTATT TGAAGAGGGT TCCGCAATGT TGGATGAAAG 
    GTTGGGTAGG AATTTTCCAT CAAAAGCAAA CTCGTCCCCA TCTCGCTGTG 
    CAATCTGCCA AGTGGATCAA GCACCTTTTG AAGATTTAGT GACAGATAAT 
    GGAGGTGGTT GCTGTTCTGC CCCATCGACA CCATGGGTTG GCCCTTATCT 
    TTGTTCAGAT TGTAGGAAAA AGAAGGATGC AATGGAAGGT AAAAGATCTA 
    GTCGCTCAAC AGCGTGCAGG TGAAATTGCC AATAGGACTA ACTGGTCCTT 
    GTTCGTGCAA ACTGGTCTCC TGGTTCGGTT GTCTGCCACA TGTAAAAAGA 
    GGATAATAAT CTGTTTGCTG CTGGATCCAA GTATTATTGG TGAAACTAAC 
    TGCAATCTAG CCTGAACTGA ACAAATTGGG CTACTAACAA TCTTGGGAGT 
    CTATCAACAG CGCAGATGAA AATTTCTGTT TGCACTGGGA AGATAGCTCA 
    CAGGATTTCA ACCCCGTAGT TTTTTTTTTT TTTGAACCTT AGTATGTAAA 
    GTGAAATGTC TAGCTTAACA ATGTTTGTAA GAGATGGCAA TTGGCAAGGC 
    TCCTTGTTCT ACCTTGGAAT GTATATGCTT GTGGAGCCGA ACAGACTAAT 
    TTATTTATCT CATGCTATCC TAATCAATGG TAATGTCTTT CGGTGTTC

    Gene models with high sequence identity

    1. AT1G09160.2 [+] show detail - Protein phosphatase 2C family protein
      E-value: 3e-162; Score: 569.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEIN PHOSPHATASE, PLANT 2.6e-176
    HMMPanther Protein phosphatase 2C 2.6e-176
    Gene3D Protein phosphatase 2C-related 9.8e-49
    HMMSmart Protein phosphatase 2C-related 3.2e-59
    HMMSmart Protein phosphatase 2C-related 0.0011
    HMMPfam Protein phosphatase 2C, N-terminal 2.1e-36
    superfamily Protein phosphatase 2C-related 1.7e-51

    See the detailed result >

    AT1G09160.2

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G68410.2); Has 5570 Blast hits to 5569 proteins in 486 species: Archae - 4; Bacteria - 416; Metazoa - 1194; Fungi - 467; Plants - 2390; Viruses - 7; Other Eukaryotes - 1092 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR