K32717

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32717

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32717

Determination of introduced cDNA(s)

  • J013088B04 - Rice Full-length cDNAs - Original: J013088B04

    full reading [+] show sequence

    Nucleotide sequence: J013088B04 - full reading 
    GGCTTGCTTT TGCGCAAGTT TCAAGCGATG CGCCACCGCG TCGGCCCCGC 
    CGCCGCCGCC GCGGCGGCGC TCCGGCGGTT CTCCCACCTC CGCCCGCCGG 
    CCCCGCCGGA CCCGAGGCTC GCCTTCCTTC GCTCAGAGTT TGATGGCCGT 
    GAGCCCGGCC GACAGCCACC GTCACCGGAA ACAAGAGAGG AGCCAAAAGG 
    TGGCGAGCGC GCGCGCTCGC CGGTGGCCGT GGATATCGCG CACCCGTGGC 
    CGGAGTGGGT GGCGCTGATG GAGCTCCTCC TTCAGAGGGG CCACCTCGAC 
    GCCTCCGTGT TCGCCGGCGG CGCGGCTGGC TCGCCGTCCA AGGATTCCAA 
    CGTTATCCGC ACCGCCTGCC TCCGGTTTGG GCGAGAGCGG CCGGAGCTTA 
    TCAGGCATCT ATCAAGATGG GATATCCAGG TTGCTCTCCG GTATGGGTGC 
    CCCAGCATTG ACAGGAAGGT TGTTAATTCT GGGAAGCGAT TACGTGCTCA 
    TGTAGGCCTT GATGAAGGAG AGGTCTGCAG CCAATGCAAT TTAAGGGGTG 
    GATGCGAGAG GGCATATGTA AAGGCTCGGA AGGAGGAAAT TGGAAGAACT 
    GTGGATGTTA TGCGCATCCT TTTGACTTAT GGGCTTGACA CAGTTACTGG 
    CAATGTGGAG AACAGAGCAT GTCTAAACAA AACCGTTAAA GAATCCATTA 
    AGAGCCTACT TAATGAGATT GTTGGGTTCG ATTCCATGGG TCCTGGTTCC 
    AGCACTGAAA AGCCCACACA CCGTATGCCA AAAGGACAAT CTTCTATTCC 
    TATGAAGCAG GGTGATTGGA ATTGTCCCAA ATGCAACTTC TTGAACTTTG 
    CAAAGAATAT AAAATGTTTA CGCTGCAATG GAGAATTTGA AGAGAGGTAT 
    CAGCTGCTCC ATGAGAACCA AGAGCATCTT CCTCTCAAAA AGGGTGATTG 
    GATATGCAAA AGGTGCAACT TTTTGAATTT TGCAAAGAAT ACAAGATGCC 
    TTCAGTGCCA TGAGAAACCA ACAAACCGTC AACTCAATCC AGGGGAATGG 
    GAGTGTGTCT CGTGTAATTA TTTGAACTTC AAGAGGAATG CATTCTGTTT 
    GAAATGTGGT TGGAAAAGAC CAAAATCATT GAACAACCAA GACAGTATTG 
    AATCACAACG TGACTTAGAT GATAATAAGC ATTCTGCTAT TTCATTTATC 
    CAAGATGGCA TCCAATCGAG GAGGCAAATT CTGCAAAATA AGGCTCCATT 
    GTCTGACGAA GATTCAGACT TCTGGAGCTC CGAGGAGGAA GGGGCCTACC 
    ACAGTGACAA AAACATTCCC CCAATAAAGA AGGATTACAA GTTCCTTGAA 
    AGTTTTCCCA TCATTGGGGG TAGGACTGCT ATGTCTCAAG ATCCTCTTGA 
    GAGGGAGAAA TGGAAGGACG AAATGTCCAG GAGAAACAAA GGGCTCCTAA 
    CAGAAGTATC AGAAGAAAGT AATCGGCCTT CGTGCCCCGT TCGTATTCCG 
    AGAAGCATTG AGCAGATTGA ATCTGGTGAC GACGACGACG ACGACATTTC 
    ATCATGGTTT TCTGGTGGTA CTAGTAATAT TAACATGAAA AAGGCATAGC 
    CAGATTTCTG TAAACGCTAG TATCTGCACA ATTTCATCTG TAATATTTAC 
    AGTGTAGGCA TTCAGTAAGA AAAAATCATG TCTCGCAAAG AACTTCAGTA 
    TTGTACTTCT GCTATGATCT GTCTTGGCAA ATAATATACT ATGATTTTAC 
    G

    Gene models with high sequence identity

    1. AT1G70650.2 [+] show detail - Ran BP2/NZF zinc finger-like superfamily protein
      E-value: 4e-102; Score: 369.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RanBP2-type 10.026
    ProfileScan Zinc finger, RanBP2-type 9.36
    ProfileScan Zinc finger, RanBP2-type 9.156
    PatternScan Zinc finger, RanBP2-type 0
    PatternScan Zinc finger, RanBP2-type 0
    PatternScan Zinc finger, RanBP2-type 0
    HMMPfam Zinc finger, RanBP2-type 5e-07
    HMMPfam Zinc finger, RanBP2-type 6.1e-06
    HMMSmart Zinc finger, RanBP2-type 3.3e-07
    HMMSmart Zinc finger, RanBP2-type 2.1e-06
    HMMSmart Zinc finger, RanBP2-type 0.045
    superfamily Znf265, first zinc-finger domain 4e-10
    superfamily Znf265, first zinc-finger domain 5.6e-10
    superfamily Znf265, first zinc-finger domain 3.6e-06
    HMMPanther gb def: Asparagine-rich protein (ARP protein) 1.3e-06
    HMMPanther ZINC FINGER PROTEIN 1.3e-06

    See the detailed result >

    AT1G70650.2

    Model type
    Protein coding
    Short Description
    Ran BP2/NZF zinc finger-like superfamily protein
    Computational Description
    Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 2 (TAIR:AT1G70660.1).
    Link
    InterPro Scan - TAIR