K32939

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32939

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32939

Determination of introduced cDNA(s)

  • J033046A21 - Rice Full-length cDNAs - Original: J033046A21

    full reading [+] show sequence

    Nucleotide sequence: J033046A21 - full reading 
    GAGCTCCAAG CCTATCCAAG TGGAACGCAA CAGAGGCGTC GTCTCCTCCT 
    CTCCTCGACC TCTCGCGGTT GGAGGTCTCG CGCGCGCGTG AGGCAACAAG 
    TGCCCGTTCG ATCGACCGGC AAGGATGGCG ACGGCAGCGA GAGCGGCGTC 
    GTGCACCCCC GCCGCTTGCG CTGTGTTGGT CATCCCCATC CTAGTCCTGA 
    TCATGGCAGG GCAAGTGCGA GTCGCGGAGG CGCTGTCCAT CGGCGTGAAC 
    TACGGGCAGA TCGCGAACAA CATCCCGTCG CCGTCGCGGG TGTCGTGGCT 
    GCTCCGGTCG CTCAAGATCA GCAAGGTGAA GCTGTTCGAC GCCGACCCGC 
    ACGTCCTGCG CGCGTTCCTC GGCACGGGCG TGGAGTTCGT GGTCGGCATC 
    GGCAACGAGG CCGTCCCGGC GATGGCCAGC CCCGCGGCGG CGGAGTCGTG 
    GCTGCAGCTG CACGTGGTGC CGCACCTCCG CGCCGGCGCG CGCATCACCT 
    GCATCACCGT CGGCAACGAG GTGTTCAAGG GCAACGACAC CGCCCTCCAG 
    GCCAGCCTCC TCCCGGCGTT GCGGTCCGTG CACCAGGCGC TCGGCGCGCT 
    CGGCCTCCAG GGCCGCGTCA ACGTCACCAC CGCGCACTCG CTGGACATCA 
    TGGGCGTGTC CTACCCGCCG TCCGCCGGTG CGTTCCACCC CTCCGCCGCG 
    CCGCACCTGC AGCCGTTCCT GGCCTTCCTG TCGGCGGCGA GGGCGCCGTT 
    CCTCATCAAC TGCTACCCGT ACTTCGCCTA CAAGGACGAC CCGGCGCGCG 
    TGCCGCTGGA GTACGTGCTG TTCCAGCCCA ACGCCGGCGT CGTCGACCCG 
    CGCACGAGGC TCGTCTACGA CAACATGCTG TACGCGCAGG TGGACGCCGT 
    GTACGCGGCG ATCCAGGCGA TGGGGCACAC GGACATCGAC GTGAAGGTGT 
    CGGAGACCGG GTGGCCGTCC CGCGGCGACC CCGACGAGGC CGGCGCGACG 
    CCCGAGAACG CCGGGACGTA CATCGGGAAC CTCCTCCGGA GGATCGAGAT 
    GAAGCAGGGC ACGCCGCTGC GGCCGCAGGC GCCCATCGAC GTCTACGTCT 
    TCGCGCTCTT CAACGAGAAC CTCAAGCCCG GCCCGGCGTC GGAGCGGAAC 
    TACGGCCTCT TCTACCCCGA CGGCACGCCG GTCTACAACG TCGGCCTCCG 
    CGGCTACCTC CCGCCCATGG CATCACACGA GGCAGCGACC CAGGTGATCC 
    ATTGGTTCCT ACTTATCGCC ACCGCATCGG TCGTTTTCGC CTTATCGTGA 
    CAGTATCAGC CACTGTACTT AGTGAGTCGT GACAACTGCA GTTAACGGGG 
    GTGCCATTCA GAAGCTGAAA ATGGCTTCGC AGTGATATTA GATTAGAGGA 
    TAGATCTAAC AGAAATTTGG AAAGTATTAA CCCACCAGGC TTGCACTGCC 
    TTTCGTCTTA CAGTGTTACA GAGGAAGAGT CATACAGAAG AATTGTCATT 
    GGTCGATAAT ACATAGCAAA TCATCAGTTG TAAGCGTATC ACATTCTTTT 
    GGGATTTATA AATGATCTTG TTCTATTCTG GC

    Gene models with high sequence identity

    1. AT2G27500.2 [+] show detail - Glycosyl hydrolase superfamily protein
      E-value: 8e-117; Score: 417.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 6.1e-103
    Gene3D Glycoside hydrolase, subgroup, catalytic core 3.1e-109
    HMMPfam Glycoside hydrolase, family 17 7.8e-89

    See the detailed result >

    AT2G27500.2

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase superfamily protein
    Computational Description
    Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR