K32951

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32951

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32951

Determination of introduced cDNA(s)

  • J033132D17 - Rice Full-length cDNAs - Original: J033132D17

    full reading [+] show sequence

    Nucleotide sequence: J033132D17 - full reading 
    GCTTCTCTCT CTCTCGACTC TCGACGACGA CGCGGCGGCG GCGGCGGCGA 
    GGTGGGAATG GACATGCCGC CCACGCCCCT TCCGCCGGAG ACCGCCAACA 
    CCTCGCCCGC TCCCAACGGC GCCACCGCCG GAATCCGGGT TGAGAACTGC 
    TACGTCTTCA AGAGCCGGCT GCAAGAGTAT GCACAGAAAA CCGGCCTCCA 
    GACTCCAGAG TATCATACCT TCAAGGAGGG ACCTTCCCAC GAGCCTGTCT 
    TCAAGTCCAC AGTGGTGATT AATAATACCA GCTATGACTC CCTGCCCGGA 
    TTCTTCAACA GAAAGGCTGC AGAACAGTCT GCTGCTGAAG TTGCCCTCAT 
    GGAAATTGTC AAGTCCATAC CAGCCAACGC AAATATCCCA GCTGTTCAAG 
    AGACTGGGCT GTGCAAGAAT CTTCTTCAGG AGTATGCACA GAAGATGAAT 
    TATGCCATTC CATCTTATAT TTGCACCAAA TCAGCCTCAG GCTTAGCTCC 
    TTTCATATGC ACTGTAGAGA TTGGTGGAAT ACAATATATT GGTGCTGCAG 
    CCAGGACAAA GAAAGATGCA GAGATAAAAG CTGCCCGAAC TGCTCTTCTG 
    GCAATCCAAG GTCAATCAGA GGGTTCGGCA AATGGTGCAA CAAAATATAT 
    TGTAGTTCCT GGTAAAAGGG TAGGTAAGGA GGTAGAGAAA AGGCCAATTG 
    AAACACCGAA ACCACTTAAA GTAAAGAAAG GTGGTTTCAA GAAGAAATGG 
    AACAAGAGGA AATTCATGAA GAAGGATGGT CAAGCTGTTG ATGTGGAAAA 
    GGATGAAGCT AGAGTGGCTG GAGATGCTCA CGATTCTGAT GTCCTAATGC 
    AGCCAACAGT AATAACACAG GAGGCATCTT GTGGCACTCT GTTCCTGCAA 
    CCTTGTGAGG AAGCTAAAAG AGTAGAAGCT GAGCCACCTA GAGATATTGA 
    AATGGTACAG CCTGATAAGG AGAACCAACA CAGTGACGCT GCATTGGTGC 
    AACCTGATGA TGAAGCTAGA GTAGAACAGG AGCCATCCAG AGATATTTCA 
    GTGGTGCAAC CTAATGAGGA AGCTATAAGT GGTAAGCAGG AACCACCCAT 
    CGATGCTGCA ATTCTGCAAC CTAAAGAGGA AGCTTCAAGT GTAAAGCAGG 
    AACCATTCAT CGATACTGCA ATGCTGCAAG CTTGTAAGGA AGCTGGAAGT 
    GTAGAACTTG GGCCAGCCAG AGATACTGTA ATTTCCCAAC TTAATGAGCA 
    AGATAGGGCT GTAAAGCAGG AGCCAGCTGG TGACATTGTA GTGCCACAAC 
    CTGACGTGCA CGCTAGGGTC GTAAAGGAGT AGACACCGAG AACGGAAACT 
    AATGGGGAAG CTACGAACAT GAAGGAGACA CCAAAGAACT CTGCAATATG 
    TAATTCTCCA GAGACAAAGG ATTTTGGAAA TATTACAGCA ATGGGTTCAG 
    ATCCTCCCAC AACTAATATG AGCGAAGAAT AAGCCGTGGT TGTTGAATCA 
    AAATGCAATA GCCTTCCAGT GTCAGTAGTG TGTTCACCTG CAGAGGTGTG 
    AAACCTGAAT GGCTGGCTTT TCCAGTTTAA AAAGAGGCAG CTGGAATAGG 
    AAGATGTATG TGGGCTGAGA ATAGTTAGTT CATATTTGTC ATTGTTAGCT 
    AGGCATTTGT ATGCCTGATG ATATGAATGA AATGTATTGC CTGCTGCTTT 
    AGTGAGTATT ACTTTGAAAA GAAGGGGAAA AAAAATGAAA TCGAGGTTTC 
    TG

    Gene models with high sequence identity

    1. AT1G09700.1 [+] show detail - dsRNA-binding domain-like superfamily protein
      E-value: 2e-54; Score: 211.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily dsRNA-binding domain-like 4.5e-15
    superfamily dsRNA-binding domain-like 2.7e-13
    HMMPfam Double-stranded RNA binding 9e-15
    HMMPfam Double-stranded RNA binding 7.8e-13
    Gene3D Double-stranded RNA-binding-like 1.3e-09
    Gene3D Double-stranded RNA-binding-like 4e-05
    ProfileScan Double-stranded RNA binding 13.786
    ProfileScan Double-stranded RNA binding 10.387
    HMMSmart Double-stranded RNA binding 1.6e-16
    HMMSmart Double-stranded RNA binding 3e-11
    HMMPanther RIBONUCLEASE III 1e-05

    See the detailed result >

    AT1G09700.1

    Model type
    Protein coding
    Short Description
    dsRNA-binding domain-like superfamily protein
    Curator Summary
    Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.
    Computational Description
    HYPONASTIC LEAVES 1 (HYL1); CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2 (TAIR:AT2G28380.1); Has 992 Blast hits to 893 proteins in 320 species: Archae - 14; Bacteria - 506; Metazoa - 117; Fungi - 6; Plants - 270; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR