K33007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33007

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33007

Determination of introduced cDNA(s)

  • J033079D23 - Rice Full-length cDNAs - Original: J033079D23

    full reading [+] show sequence

    Nucleotide sequence: J033079D23 - full reading 
    GCTCACCCGC GCCGCCCACC TCCCCTCCCC TCCCCTCCTC TCCTAGACCC 
    GGTCCACCGC CGCCCCTCTC AGATCCGCCG TTGCCGCGGC GGCCTCGGCA 
    GCTCGGTCTC CCCCCGCTAG GGTTTCGCCG TCTCCGATCG GAGGGGCGCA 
    GCGATGGATC AGAGCAGGCG GGCGGTGGAG TCGTACTGGA GGTCGCGGAT 
    GGTGGACGGC GTCACGGCGG ACGACGACAA GGTGGCCCCC GTCTACAAGC 
    TCGAGGAGAT CTGCGAGCTC CTCCGCGCCT CCGACGCCAG CGTCGTCAAG 
    GAGGTCGCTG ACTTCGTCCT CAAGCGACTC GACAACAAGA GCCCCGTCGT 
    CAAGCAGAAG GCTTTGCGGT TGATTAAATA TGCTGTTGGG AAGTCTGGTA 
    CTGATTTCAA GCGGGAAATG CAACGGCACT CAGCAGCTAT GCGCCAGCTT 
    GTTCACTACA AGGGACACCC TGACCCCTTG AAAGGGGATT CTCTTAATAA 
    GGCTGTCCGT GAAACTGCAA ATGATGCCAT TGCTGCTATT TTCTCCACAG 
    AGGAACCTAA ACCTGCTGTT GCAACAGAAG GTCTTGGCAA GCGCATACAG 
    GGTTTTGGAA ATACTAATTT TGAGCCATCA AGAGATGACA AAAAATCTTT 
    CCTTAGTGAG CTAAGTGAAG TAGTGGGCAT TGGCAGTGCT TCCATTAAAC 
    AGGGTTTGAG CAACTTTGCT GCTTCTCATT CATCAATGAT AACAAATGAT 
    AATGGTGGTC CGTACAAGAG CCCAAACCTT CGTAGGTCTC TGACCACAGA 
    AATGGATAAA TATGGCAGGT ATGATCCAAG TGAAATTCAA GGCGAGAGCC 
    GTTCTTCATC TGGTGCTTCA AAGAATGTTA GTTCTGGTTC ATGGGGTCCT 
    AGTCCATCCA GTTCTGCACC AACTGATGAT ACTGGTTCAA GTCAAACAGG 
    GGTTAAGACT CGTGAAGAGA GACTTTTAGA TACAATTGCA ACTTCAAGTG 
    GTGTGCGGTT GCAACCAACT CGAGATGCTC TGCAAATATT TCTAACAGAA 
    GCTGCCAAAT TGGACGCAGT TGCTTTGAGC CGTGCCCTTG AGAACAAATT 
    GAATTCTCCT TTATGGCAGG TTCGCATGAA GGCAATTTGT GTATTGGAAG 
    CAATTGTAAG GAAACAGGAT ACTGATCCTT ATTCAATCAT TACTTCATAT 
    TTCTGTGAGA ACAGTGCATC TGTTGTTAGA TGCTGTGAGC TTCCGCACGT 
    TTCTCTCAGA GAAAAGGCTT CGAAGGTCTT AAATCTGCTG GTTGGGGAAC 
    AACCTACTGG AAGCAATAAT TTTTCAGAAA CAAAGACAAC AGTACCTGCT 
    GCACAGATGC CTGATTTGAT TGATACAGGG GATCAAGATG ACCCAGGAGC 
    TCAAAATTCA GCTCAGGAAG GTAGCGAGAG GATAATGGGG AATAGCATGT 
    TTACTTCTTC GGTTGATGAT TTGCTGGGTG GTGAACCTAT TGCTGATATA 
    AGTACCACCA CCAGTAATGG TAATGGAGGT GATCCGTTTG CAGACGTTTC 
    ATTCCATGAG ACAGCAGATA CTAAGGATAC TAACGACCTA TTCTCGGGGA 
    TGACGGTAGA AGAAAAGGCA ACAGCAGCCT TGCATGATAG CTCATCAATA 
    AACAAAAATG AATTGTCAGA TATATTTGGC AGCAGCCCTG AGCCATTCTT 
    CCAAGAAAGA GTAGAGGATA AAGGAACCGT GAATGATTTG ATGGCTGGTT 
    TGAACCTTAA TGGAACTGCC CAAGCTCAGC CTGGGATTAA AACAGAATCT 
    AACAATACTG TCAATGTTTC ACAGCTCTTT GACATGAACA GTCAGACAAC 
    AAATGTGGCT AATTCTGCAG CAATGACTGG TATTCTTGGC CAAAGCTTTT 
    ATCAGCAACA GCAGGTTCCC TTGCAGTACA ACTTGCCATC ACAGATGCTG 
    TTAAATCCAG CATTTGCTGG GCAGCAATTA AACTACGGTG CTATGAGTGT 
    TCTTCTTGCT CAGCAGCAGC AGCTGCTGCA AAATCTAGGA AATTTCAATG 
    CTGGGTTGGG ACATTCGTCT TTGAATGCAA TGAACAGCGG AAATGCATCT 
    GTGCTTCCTG ATATCTTCAA TTCAAGTAAC CAACCTCAAC ATGTTGCTGT 
    GATGAGCAAC TCAAAGAAGG ATGAAACTAA AGCTTTTGAT TTTGTTTCGG 
    ATCATCTTGC AGCAGCTCGT GGTTCAAAAA AGTAACCCGA GAGCGATGGG 
    TATGTTCAGA ATGTAGCAAC AATGCATTTG TTTGGCTTCA CGCAAACTTC 
    ACTCGTACTC CATCGATTAG CTGGATCAAT CTCAGGACAG GTTTTGCATG 
    TTGTGCTGCA ACAGATGACC CAAGAAAGAA AGAAAAGAAT TCACGACGGG 
    GGATTGTGTT GTATCATGTA TCTAGACAAA TGTCGATTTT TATGTTGAAA 
    TAAGCTGTAC TTATCTTCTC AGTTTCTTTT GATGCCTTGC CTTTTTTTTT 
    TCTTTTAAAG AGTCGGACAT TGTAGATTGT TCTCGGGCGG GATTTTGTTT 
    TTGCTGCTGT ACAACAGCAT ATTTGGTTCT TTTGACGGGA ATTGTAAAGC 
    TTGCTACGTT AATAACAGGT GCCATACGGG AATAATGATG CCTCTTGAAC 
    C

    Gene models with high sequence identity

    1. AT3G16270.1 [+] show detail - ENTH/VHS family protein
      E-value: 6e-165; Score: 578.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart VHS subgroup 7.9e-17
    superfamily ENTH/VHS 1.3e-06
    HMMPanther UNCHARACTERIZED 1.5e-37
    HMMPfam Epsin, N-terminal 4.4e-05
    ProfileScan VHS 9.723

    See the detailed result >

    AT3G16270.1

    Model type
    Protein coding
    Short Description
    ENTH/VHS family protein
    Computational Description
    ENTH/VHS family protein; INVOLVED IN: intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Epsin, N-terminal (InterPro:IPR001026), ENTH/VHS (InterPro:IPR008942); Has 168 Blast hits to 159 proteins in 72 species: Archae - 0; Bacteria - 9; Metazoa - 51; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR