K33032

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33032

Determination of introduced cDNA(s)

J013106H04 - Rice Full-length cDNAs - Original: J013106H04

full reading [+] show sequence

GGCTGGAATT CAGGGTAGCG CTAATGCTAC CAACAATAAA GCCTTGGGTG 
CCGTTCTGAA TCAGCAATTT GTCATACAGC TTGGCCTCTT CACTGCCTTG 
CCAATGATTA TAGAGAACTC TCTTGAACAG GGTTTTCTGC CTGCTGTCTG 
GGATTTTTTT CACTATGCAA ATGATGTTTT CGTCCGTGTT CTACACATTT 
TCCATGGGGA CGAAAAGCCA TTACTATGGC CGGACAATTC TTCATGGCGG 
TGCTAAGTAT CGTGCTACTG GCCGTGGTTT TGTTGTGCAG CATAAGAGTT 
TTGCTGAAAA TTACAGGCTG TATGCTAGGA GCCACTTCAT AAAGGCAATA 
GAACTTGGAA TAGTATTGAC TGTGTATGCA GCTCACAGTG TGATTGCAAG 
GGATACACTT GTTTACATAA TCATGATGAT ATCTAGCTGG TTTCTAGTGG 
TATCATGGAT CATGGCTCCA TTTGCTTTTA ATCCATCTGG CTTTGATTGG 
TTGAAAACAG TGTATGACTT TGATGATTTC ATGAACTGGA TCTGGTACCC 
TGGTAGTATC TTTTCTAAGG CTGAACACAG CTGGGAAGTT TGGTGGTTTG 
AGGAGCAGGA TCATCTACGA ACAACTGGTC TTTGGGGAAA GATTTTAGAA 
ATATTGTTAG ATCTCAGATA CTTCTTTTTT CAGTATGGGG TTGTATACCA 
GTTGAAGATC GCAAATGAAA GCAGAAGTAT TGCTGTTTAT CTGCTTTCCT 
GGATTTGTGT GGCTGTGATT TTCGGCATTT TTGTCCTAAT GTCATATGCT 
CGAGACAAGT ATGCTGCAAA ACAACACCTT TACTACCGGG TCATCCAATC 
TGGTGTCATT ATTCTTGCAG TGCTAGTGCT GATAATATTT CTGAAATTTA 
CTAAATTTCA AATCATTGAC ATCTTCACAA GCCTTTTGGC ATTCATTCCT 
GGTTGGGGCT TGATTTCCAT TGCTCAAGTG ATTAGACCAT TCATTGAGTC 
TACTGTGGTC TGGGCCAGTG TTGTTTCTGT GGCACGTTTG TATGAGATAC 
TGCTTGGGGT GTTTGTTATG GCGCCAGTTG CATTCTTTTC CTGGTTGCCT 
GGATTTCAGG AAATGCAGAC GAGGGTACTT TTCAATGAAG CTTTCAGCAG 
AGGCCTCCAG ATATCCCGCA TTCTTGCTGG CAAGAAAACA ATTGCAGTTT 
GAGGCTCTAA CAAGGTTATC GCAGTTAGGC CGTCCTCCGT CACCTCTGTA 
CAGCTTCTTA TGCAATGTGG AAGGCTTTCT GTTTACTGAT ATAGCTTAGA 
TCCATATTGA ACCTTTTAGA TGGCTGATTA GCTTCAGTCA TCTTACTCTA 
GATGTTCAGA TTTGTACTGA GTAATTTAGG CCTCTCCAGT TTTGCACCTT 
CTTAGAGCTA GTTGTATGTA GATGATTCTG TTGCAGCATT ACCCGTGAAC 
TCTAATGGCT TGTTTGTTAA CCTGGCTGGA TGTTCCATTT TTTGCGCCTG 
G

Gene models with high sequence identity

AT4G04970.1 [+] show detail - glucan synthase-like 1
E-value: 8e-148; Score: 81.30

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glycosyl transferase, family 48	9e-06
HMMPfam	Glycosyl transferase, family 48	8.4e-48

See the detailed result >

AT4G04970.1

Model type: Protein coding
Short Description: glucan synthase-like 1
Curator Summary: encodes a gene similar to callose synthase
Computational Description: glucan synthase-like 1 (GSL1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: reproduction, 1,3-beta-glucan biosynthetic process, pollen development; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: glucan synthase-like 5 (TAIR:AT4G03550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR