K33033

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33033

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33033

Determination of introduced cDNA(s)

  • J033100L02 - Rice Full-length cDNAs - Original: J033100L02

    full reading [+] show sequence

    Nucleotide sequence: J033100L02 - full reading 
    GCTCTATCCA TCTAGATTTT GATCTTCCCC TCCTCGCTGC TTCCCCTCGC 
    CCTTCTGACC TGGCGCAGAT GTTTTCCCAC GGCGCTGATT CCGCCCACGA 
    CGCCGGCGCC GTCAGCACCG GTGCCTCCGG CGTCCCCACG CGCTTCGTCT 
    GGCCCTACGG TGGCAAGAGG GTCTACCTCA CCGGCTCCTT TACCAGGTGG 
    ACAGAACATT TGCCAATGTC TCCTGTTGAA GGTTGTCCCA CCGTTTTTCA 
    GGCCATATGC AGTTTGTCCC CTGGGATTCA TCAGTACAAG TTTTGTGTGG 
    ATGGGGAATG GCGGCACGAT GAGCGGCAAC CTACCATAAC AGGAGACTAT 
    GGTGTGGTTA ACACTTTATG CTTGACTAGG GACTTTGACC AGATAAATAC 
    AATATTGAGC CCTAGTACAC CTGGAAGTAG GATGAACATG GATGTGGACA 
    ACGACAATTT TCAACGTACT GTTTCTTTGT CTGATGGCAT TATTCAGGAA 
    GGTCCTCAGA GAATTTCAGA GGCAGCTATA CAGATCTCTA GGTGTCGTGT 
    AGCGGATTTT CTGAATGGAC AAACTGGGTA TGATTTACTC CCAGATTCTG 
    GCAAGGTCAT TGCTCTAGAC GTTAATTTGC CTGTGAAGCA ATCTTTTCAT 
    ATTCTTCATG AACAGGGAAT TCCTGTGGCA CCTCTATGGG ATTCATTCAG 
    GGGCCAGTTT GTTGGCCTTT TGAGCCCACT GGATTTTATA CTCATATTGA 
    GAGAGCTGGA AACTCATGGC TCCAATCTGA CAGAAGAGCA GCTTGAAACA 
    CATACTATAT CTGCGTGGAA GGAGGCCAAG CGTCAAACTT ATGCCAGAAA 
    CGAGGGTTCT TGGAGGGCAA ATCACCATTT AGTTCATGCC ACCCCTTATG 
    AATCCCTGAG GGAAATTGCT ATGAAGATAC TGCAAAACGG TGTTTCTACC 
    GTTCCAATTA TGTTTTCCTC ATCACCAGAT GGCTCATATC CACAATTGTT 
    GCATCTTGCT TCCCTTTCTG GAATTTTGAA ATGTATTTGT AGATATTTTA 
    AAAATTCTCA AGGTAATTTA CCTATTTTGA GCCAACCTGT ATGCACAATT 
    CCTCTGGGTA CCTGGGTTCC AAAAATTGGT GATCCTAATG GCCGTCCATT 
    GGCTATGTTG CGGCCTAACA CATCTCTTAG CGCTGCCCTG AATTTGCTGG 
    TTCAAGCTGG TGTGAGCTCA ATACCAATTG TGGATGACAA TGACTCACTG 
    CTTGACACAT ATTCCAGAAG TGACATCACA GCTCTTGCAA AAGACAAGGT 
    GTACACACAC ATTCGCCTAG ATGAGATGAC CATTCATCAG GCTCTGCAGC 
    TTGGACAGGA TGCAAATTCG CCCTTTGGAT TCTTTAACGG GCAAAGATGT 
    CAGATGTGTC TCCGGTCTGA CACTTTGTTG AAAGTGATGG AGCGATTAGC 
    TAATCCTGGG GTGCGCCGTG TTTTCATTGT GGAAGCTGGT AGCAAACGTG 
    TGGAGGGCAT AATATCACTG AGTGATATTT TCAAGTTCTT GCTGAGCTAA 
    GTGAAAATGC CCGAGCCATC TGTGTTTTGT TCTCACAACT GCCGGAGTTA 
    ACAATAGCAG AAAAAAATTG TGAATCTCCA ACATCGATCT CTCTGGCTTT 
    TGGATCAGAC AGGTGTCTTT TCCCGATAAT GGCCAACCAG AGTCTGTAAA 
    GTCTTTTTTT TTTTCCCTTG CCCCTTCGTT ACCAAAATGT CTGGTGATTT 
    TTATTTATTG GATTGTTTTG CTGCTTGCTC GGTTTCTGAG CCCCCCAAGG 
    AGTTAGTAGC TCTGTTGAAA GGGTGGGATG GGCGCTTAGA GACATATTTT 
    AGCATGAATC ATCATCACAG GGAAGTAAGA ATTGAAGGAA AGAGGGGATG 
    CTCTGAAGCA AGAAGGATGA ATTCAATGTG TTGTTTTTGC TCAACAACTG 
    TTTTTTTGGC GGGCAGTGTT GCAACCATGA AAGGAGAAAT TACAGTCGGC 
    TCCTTGCTTG TTAGACAAAA AAAAAAAAAG AAAAAAAAGA AGAGAAAAAC 
    TATTGGATAT CTGATGATGT AGTGACTGAG AAGCAGGAGT GGAGTTGTGT 
    AAAACCTGTA CCACCTGATT TTTATGTCTA AACCGCAGCT TACTC

    Gene models with high sequence identity

    1. AT1G09020.1 [+] show detail - homolog of yeast sucrose nonfermenting 4
      E-value: 0; Score: 655.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cystathionine beta-synthase, core 1.2e-06
    HMMPfam Cystathionine beta-synthase, core 1.4e-11
    ProfileScan Cystathionine beta-synthase, core 8.779
    ProfileScan Cystathionine beta-synthase, core 10.102
    ProfileScan Cystathionine beta-synthase, core 6.259
    ProfileScan Cystathionine beta-synthase, core 8.397
    HMMSmart Cystathionine beta-synthase, core 14
    HMMSmart Cystathionine beta-synthase, core 5e-07
    HMMSmart Cystathionine beta-synthase, core 0.054
    superfamily CBS-domain 3.3e-06
    superfamily CBS-domain 0.00094
    HMMPanther AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATOR 2.1e-91

    See the detailed result >

    AT1G09020.1

    Model type
    Protein coding
    Short Description
    homolog of yeast sucrose nonfermenting 4
    Curator Summary
    putative activator subunit of SNF1-related protein kinase
    Computational Description
    homolog of yeast sucrose nonfermenting 4 (SNF4); CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 1379 Blast hits to 1368 proteins in 272 species: Archae - 14; Bacteria - 104; Metazoa - 613; Fungi - 295; Plants - 229; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR