K33124

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33124

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33124

Determination of introduced cDNA(s)

  • J023114E05 - Rice Full-length cDNAs - Original: J023114E05

    full reading [+] show sequence

    Nucleotide sequence: J023114E05 - full reading 
    GGGCGGTAAC AGTGCTAGCT CCATGGCGTT CTTCAGCAGC GGATCGCGGG 
    CGCTGGTGGA AATCCTGACG GGATTGCAGA GTGTTGAACG ACCTATGCCT 
    GTTGATCATA CCTTGTTTGA GTTTGGATCA ATCCGTTACC ATTTACAGGC 
    TTCTATTACA GATTCAGAGA ACATATACTT GTCAATATCA ACACCATCTC 
    TTTCTTATGA GGCTTCGCCA TCCAGCGGCT TGCCTGAAAT CACATTACAG 
    GAGACAAGGA AAATGTATCA CAAGTTTGCA GAGATCATCG AGCCTGCAAA 
    AGAAGGATAC ACTTTGACAC TGAGACTGAA CTTCTCTGGC CTTACTCGAC 
    CGAAAGATCG CACCAAGGCG ATCAACCAGA TATCGTTGCT GCAATCCGTC 
    ATCCTTAGCT CGCAGCTCAA GGACATGCTG GCGAGCCTCG GCTCGTCCGG 
    CACGATGAAG CTCGTGTACA ACCAAAGGGA CCCTTTCTTC GTCAGCAAAA 
    CGCCGGTGAA GATAAGCGCC ATATTCCCCA TGCGTTTCAG GGACGACACG 
    GACCTGGCCA TCGCGTCGTC GTTCTTCCAG GAGCTACAGG ACCTCGGGAG 
    CACGTCGTCC TTCTCCAGGG CGCCGCGGTG CAGCTGGTCG CCGATCCCGC 
    CACCCGAGCT GCGCGGGGAG TACGTGCACC ACCTCACCAC CAACGGTGGC 
    TTCGTGTCCT TCGACATCCT GGCGCGGCAC GTGAAGGGGA GGAGGGCGGC 
    TAGGACGGCG TGGATCCTGC TCAATTTCCA GTCCTACGTG AAATACCATA 
    TCAAGTGCAC CCGAAGCTAC ATCCAGAGCA GGATGAGAAA GCGTCTGGAG 
    ATCATGACAG AGGTGATCGA TGACGCGAAG TTCAGAGGAA ACGATGAGAG 
    CAGCAAGAAG CTGCAAGTGA GGAAGAGAAG CAAGAGAAGA TCAATCAAAT 
    TCGCGAGAGC CAAAAAGCTC CAAAAGGGTT TCAAAGCTGT CATCGACAAG 
    ATCAAGCGGC TGCGGCTGAG GATCAGAGTG AAAGGCCTGG ACCGGTTCAG 
    GAGGCACTGC CAGTGCTTCC CAGTGCTCAA ACTGACCATG GCACAGAGGA 
    AGGAGCAGAA GTACCAGAAG CTGGAGTGAA TCCTAATCAA CTTTACGACT 
    AATCACTTTT TTTTTTCACA GCACAGGCAC AAGCGTGGTG ATACATGCAT 
    GCTGACTCTT ATCCTTTTTC CATACTGATC AAGTATACAA ATCTGGTGAG 
    TGATGAACAT CCATTCAGAT GGAGGGCACT ACCATAGAAA AAGGCTAACA 
    GGAGGACAGA CAGTACACGG TTATTTAAAA ACCGTTACAT ATATCTAAAA 
    AATATCATAG ACGACTATAT TAGGAATTGT CTATGATAAA AAGCATCTAG 
    TGTGTTTTTT TTCTTTTGAA AAGCACGAAT GTGTTTTTTG TTATTTTCAC 
    TTGTGGCCAA TCGTGCATTG GATTGTGGAA AACATGCATT TTCACTTGAC 
    GTACGTCAGG CAGTGACAAT ACCTGTTCGC

    Gene models with high sequence identity

    1. AT2G33385.2 [+] show detail - actin-related protein C2B
      E-value: 2e-60; Score: 230.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Arp2/3 complex, 34kDa subunit p34-Arc 7.7e-41
    superfamily Arp2/3 complex subunits 4e-51
    superfamily Arp2/3 complex subunits 1.9e-25
    HMMPanther Arp2/3 complex, 34kDa subunit p34-Arc 1.6e-30
    Gene3D no description 1.6e-47

    See the detailed result >

    AT2G33385.2

    Model type
    Protein coding
    Short Description
    actin-related protein C2B
    Computational Description
    actin-related protein C2B (arpc2b); CONTAINS InterPro DOMAIN/s: Arp2/3 complex, 34kDa subunit p34-Arc (InterPro:IPR007188); BEST Arabidopsis thaliana protein match is: Arp2/3 complex, 34 kD subunit p34-Arc (TAIR:AT1G30825.1).
    Link
    InterPro Scan - TAIR