K33209

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33209

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33209

Determination of introduced cDNA(s)

  • J023091M14 - Rice Full-length cDNAs - Original: J023091M14

    full reading [+] show sequence

    Nucleotide sequence: J023091M14 - full reading 
    GGCTCCCCCC CGCGCGCTCG CTAACCCTAG CCATGGCCGC ACCACCATCC 
    GACCACTAGC CGCGGCGGCC AGCGACGGCG AGGCCCCCCC ACCCCGTCCT 
    CCTCCTCCTC CTCATCCGCT TCTCTCCGGT CCGTCCCTTC GTTGACTGCC 
    GCTCGGTTTG CTTCCGAGGG TTTTCCTCTC CCGCTGCTGC TGCGAGGGAG 
    GGTCGATCCG TTCCTCCGCT GGGCGTGCCT GTGCGGGTGC TCCTCCTCCT 
    GCTTCTTCCG CGGACTCCTC CTCCTCGAAG GTCCTTGTGA ACTGAAGTAA 
    CCTCCACAGG AGTTCACATG TTCTAGAACA CCAAGTGTCA GGGGAAAAAC 
    ATTATGGATT ACAGCAACAG TTCATGTTCT AGAACATGCA GTGGGCTTGT 
    TAGGTTAAAC AACACTATAG AGTCCAATGA GGTTCTGTTT TCTAAAACAA 
    GAAGTGGGCT TGTTAGGATA AACAGCACTG TAGAGTCCAA TGAGGTTTCG 
    CTTTCTAAAA CAAGAAGTGG GCTTATTAGG GGAAACACCA ATGTGAGATC 
    CAATGAAGGT TCATATTCTA CAACACGAAG TGAGCTTGCT GGGGCAAATG 
    GCGTTGTGGA TTCCAACGTG GGAGATTTAT GTTCTAAAAC ACGAAGTGGG 
    CTTGTTAGAA GAAATGCCAC TTTGGATTCC AATGAGGGAT CATGTTCTAA 
    AACACGAAGT GGGCTTGCTA GGGGAGATGG CATTGTGGGT TTAAATCAAG 
    GTTCATCCTC TAAAACAAGA AGTGGGCTTG TTAGGGGAGG TGACATTATG 
    AATTTCAGTG AAGGTTCATC CTCTAAAACA CGAAGTGGGC TTGTTAGGGG 
    AAACACTACT GTGGCTGCCA GTAATGGTTC ATATTCTGCA ACTCCAAGCA 
    GGTTTGTTAG AGGAAACATC ATTGTGGGTT CCAAAGAGGG GTCATGTTCA 
    AGAACAAGAA GTGGGCTTGT CAGAGAAAGC ATCCAGATGG ATTACAGTGA 
    CAGTTCATGC TCTAGAACTC GAAGTGGGCT TGTCAGAAGA AAGCCCTTTA 
    TGGTTCAAGT CAAGGATGAA GCTGCCATGA ATGGGCTGTC TGATGACTGT 
    TTGAAAGAGG ACAGTCCAGG AAAGAATGAA CCAAATCACA AGAGTAATCT 
    GGTTGAAAAT AGTGATAAAC CAGTCATGAA GGGGCCTGAT GGATGGTGGA 
    AAGAAGGCAT GCTAACAAAG AATGGGTCAA AGTACATGAG TGACCCGGTT 
    CAAACCAAGG GTGAAGCATG CATCAATGGG CTTCCCGGTG GACAATGGAA 
    AGAAAACAGT GCGGAAAAGA ATGTATCAAA TCACAAGAAT GAGCTGGTTC 
    AAAGAAAGGA TGATCTAATT GTTGATGGGC TTCCTGATGG ATGGTGGAAA 
    GAGGACAGAC CAAGGAAGAA TGGATCAAAT CTGAAGACTG ATCCGTACTA 
    CATTGATCCA GTCAGTGGAT ATGAATTTCG CTCTCTGAAG GATGTGCACC 
    GTTTTCTTAA ATCAGGGGAC ATCTATAAAT GCATTGTAAG GCCAAGAAAG 
    AGAACTATCC AAGATCCTTG TACTATTGAA AACCAATCTC ATGTGAGTTC 
    CTTGCAGTTC TTCTTGGTTT GAGTTACTGG GGCATTTTGC TTCTTCTATC 
    AGGACATTAA ATAAACAAAA ATACTAGGTA TCTTAATTAC CATGCACACC 
    TCAAATTGAA CATATTTGCT TTGGTTAAAA TTTATAGAGT CCAGCCCTAG 
    TAATTATATG TTTCTTGTAG CTCAGACATC AGCCACATGT GAAGTGTCAA 
    CTGCTCCTTG TCCTGGTTGC CCCTCTTTGC GTGCGTAAAG AATCAGAGTT 
    TTCATGCACT ATTACATCAG ATAAAGAACT CTGATTCCTT CTGAATTC

    Gene models with high sequence identity

    1. AT5G52230.2 [+] show detail - methyl-CPG-binding domain protein 13
      E-value: 2e-07; Score: 54.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Methyl-CpG DNA binding 3.9e-08
    ProfileScan Methyl-CpG DNA binding 13.805
    superfamily DNA-binding, integrase-type 2.7e-16

    See the detailed result >

    AT5G52230.2

    Model type
    Protein coding
    Short Description
    methyl-CPG-binding domain protein 13
    Curator Summary
    Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
    Computational Description
    methyl-CPG-binding domain protein 13 (MBD13); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739).
    Link
    InterPro Scan - TAIR