K33429

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33429

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33429

Determination of introduced cDNA(s)

  • J023008A21 - Rice Full-length cDNAs - Original: J023008A21

    full reading [+] show sequence

    Nucleotide sequence: J023008A21 - full reading 
    GGTCCACCTC TCTCTCTCTC TCTCCCACGC CACGCCACGC CACGCTTCTC 
    CTCCTCCAGA TCCGGTTCGC CTCGCCGGCG ATGGCCGAAG ATCCGGCGGG 
    GTCCCGCCGC TGGCGGTGCG ACGCCGGCGA CGAGCACGGC TGTTGGCTCT 
    CCTCCTCCGC CGGCGGCGGC GGCGACGACC ACTTCGACCG CCTCCCCGAC 
    CCGCTCCTGC TCGTCATCTT CAACCGCATC GGCGACGTCA AGGCGCTCGG 
    CCGCTGCTCC CTCGTCTCCC GCCGCTTCCA CGACCTCGTC CCCCTCGTCG 
    ACTCCGTGCT CGTCCGCGTC GACTGCGTCA TCCCCGACGA CCCCGCGTCC 
    TCGTCGTCGT CGTCGTCCTC GCCGTCCGCC GCGCCATCCT CCCCTACGGC 
    GTCCGCGCGC GCGCGCACCG TCTTCTCCCA GATCGCGCGC ATCGTGCTCG 
    GCGGCATCAT CAAGCCCATC CAGGCGCTCG GCCAGATACT CTCCCCCGCC 
    AACTCCGCCT CCGTCCTCGC AGCATCCGTC ACCTCCTCCC CCTCCTCCTC 
    CTCCTCCTCG TCCTCCTCTT CGCCGCCGCT TCCCGGTGAC GTGTCGCACC 
    ACTCGCCATC GGAGGTGCTC CGCTCCTTCA AGGAGCTACG CCGCCTGCGG 
    ATCGAGCTCC CCGCCGGCGA GCTCAGCATG GAAGAAGGCG TGCTGCTCAA 
    GTGGAAGGCG GACTTCGGGT CCACGCTCGG CAGCTGCGTC ATCCTCGGCG 
    CCTCCTCCGC CGGCAAGGAC GGCGGCGCGG GAGCAGCTCC CGCTGTTGAC 
    TGTGGCGAGT CCGACGAGAC AGGGAGTATT CCGGAGTCGT TCTACACGAA 
    TGGGGGGCTG AAGCTGCGGG TGGTGTGGAC AATCAGCTCG CTGATTGCTG 
    CGTCTGCGCG GCATTACTTG CTGCAGCCGA TCATTGCCGA CCACACGACG 
    CTGGAGAGCC TGGACCTGAC AGACGCCGAT GGGCAGGGAG TGCTCACCAT 
    GGACAAGTGG CAGCTGCAAG AACTGCGGGT GAAGCCGGTA TCGGCATCTG 
    GGGGCTCACA CAGGACGCTG ATGCCAGCGC TTAGCATGCG GCTGTGGTAC 
    GCGCCTCACA TTGAGCTGCC CGGGGGTTTG GTGCTGAATG GAGCAACATT 
    GGTAGCCATT AAACCAACCG AGGAGGCAAC AAGGGACACG GTTGGGAGTG 
    GGATTGCTGG GTCTGCAGGT GGATGCTGGG TTTCAGATGC CTTTGAGGAG 
    CCGTATCGGA CAGCCGTGGG GATGCTCCTG AAGCGGAGGA CATATAGCCT 
    TGAGATGAAC TCGTTCTAAG CTGATGGCAA TTTGGAAGTT CTATCCGTGA 
    GGTAAATTCT GCACTGCATT CAATACTATG TTTGTCTAAT TATCTTCAGC 
    AATTGCTGTT TGCGATGCCA TGCTTTGGCT TCTCACATTG TAGCATTTGC 
    TTCAACAACA TTGTTGCTTA TTCGTGGAAA AATTAACACG CGCTCACCAG 
    TATAAACTTG CATAGTAGTA AACAGCACGA GTCTTCGAAT TTCTGAAATT 
    TGGTTTATGA GGCTTGCCAT GACTTCAGTT AGGTTGTCAT AATCAAACAA 
    AATAGCACAA CCTTTCGCTA ATTTGAATGC GAGGTTGTAA GGAGTTGGAG 
    GAGATCTGTT GTTTTAGCTG ACTCGTTATA TCCTTGAGTC TTGTGGTTAT 
    TCCTACTAGT ATATAGCAAG CTTCCCGTAT CAGTTTACAT GATCTGGATA 
    TGCATTTCTT GGCTGCCAAA TTAATGGAAC TTGATTCACA TCATATCTTC 
    CACTAACATC ATGTGCTTTG AAAATACATC GTTTTCCACT TGACATCTAA 
    TCACGATTTT CTGTATCCAG CAGTAACAAA TGAACAAAGC ATCATTCATT 
    TTTCTTGAAG AATACTCTGT AGCTGAAAGT ATTCTTTTTT GCGGTAGGCA 
    CAATAACCTT CACTGAACTG CACTGAAATA AATAAAATCA CTCATCAGTG 
    GTGATGTACA AAACATATAT CGAGTTTTAT TTTATTTTTT GTCCATGTTG 
    CTTATGAGAA TTGTTCCTGT AAATTCTGAG AGTCTGGCAA TCCACCAAGT 
    TTACATCCAG AAACAAAGGG GCGTTGCATG AGCTACTGTC TTTCTTTGCA 
    ACTAGTAGAA GCAAAACAAC CTAGATGACC AACCCTCTTT ACTTACCTTA 
    ATGTATTGTT ACAGGGTATG AATCACGCAT ACCAATATGT GCCACGGTCT 
    GTAATCTTTT GTTGTTTTTT CTTACCATTC TTGTATAAGA ACTGTAGTCA 
    TCAAGGACCA TCCATTCCAT TGCTAGTTTG AAATTATGCA ATTAGGGAAT 
    AGAAAAGTAC CAAAAAGGGT TAGGCTATTA AAAGGTGTGT ATGGTTTTTA 
    TGGTGAGAAT GGTGTTCCAA CATTTATGAT CTATGTACTG ATCATTTGAT 
    TGTACATCAC CACCACGGAA TCGTGGATCA CCCAGTATGG CCCCACATGA 
    TACATACTTT ACTTCTAAAT AACTAATTAC TTAACCAGTT CTCATGGTGG 
    AATCTTCTGC ACCTCCTTGT ATTGTTGGAG GGCGTGTCAC ATGCCACTTC 
    CTTAACTCTT GAGATTCGTT TTAGCCGTAG ATCTGCTGCA CGAGAGAATA 
    GAAAGAGGAA GGAAGATCCC ACCTGGATGC AGGATCCACT TGTTTTTTTT 
    AAAAAAAACT TTATAGATCA TTTTGAAACC CTCTGAAATA GTCCCCTTTC 
    ATTTCGCAAA TTGCAAAAAG GAAACAAAAT CAGCAATTTT ACTTAAGAAA 
    ATGTCCAATG CCTTGTTAAC TCATGCATGT GCACTTGGAT ACTTGATGCA 
    ATAACAAAGA TATTTGAAAA GCAGAGAACA TATATTATGT TTGCATTATG 
    CTTGTTGTGT TTTGCAAGAT CAACAGTTCC ACCATTCCAC TGTATGTTTC 
    CATGGTGTAG TAGTAAGCTT TAAGCAACCA ATGGATTTGT TTTTGGCGTG 
    TTGCTAACAT CTTATATTTC TCTCCTTTTC AGGATGTTAA TTTATTGCAA 
    GTTGCAACTC AAAGTACTAC GCGGCATAAG AAATGGAGTA GAAGTTCACT 
    GGCTGCCTGT TTTACTCCGG CACACGCCCT ACCCAGACAT GCTGCAAGTT 
    CTTATTTAAC GCACTACTTG TCTTGAGCAT CTGTCAGCAA GGACCTGAAC 
    GGAGGCTATA CAACCGATGA TGACGAGAAG CCGAACATGC ATCCTAGTTT 
    GTTGGAATTG CTGGGCTACT CAATGTTGAG CTTGTTGTTT GCCTCTTTGA 
    GGAAGCCCGT ACCTCTCCCA GACGTTGGTA GCACGGATAA TTTGTGCCAT 
    GCCAAGCTGT TAAGTGCTAA TCCTAATTTA TCTTCCAGTA CTCAGGAGTC 
    CTGTACCGTA CTTTTTGCAG AAAAAGTTTG TAGTAGTACA TGCGAGGTTA 
    CTCTGTTTCT GTACATCAAT ATTCAAGGGC ACAACTAGCA GAATCTTGTG 
    TAATTGAGCA CTGACGTACG TAGCATTATC AATT

    Gene models with high sequence identity

    1. AT5G46170.1 [+] show detail - F-box family protein
      E-value: 7e-106; Score: 382.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily F-box domain, Skp2-like 3.3e-08
    ProfileScan F-box domain, cyclin-like 8.782
    Coil coiled-coil 0

    See the detailed result >

    AT5G46170.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G18380.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR