K33448

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33448

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33448

Determination of introduced cDNA(s)

  • J023093I17 - Rice Full-length cDNAs - Original: J023093I17

    full reading [+] show sequence

    Nucleotide sequence: J023093I17 - full reading 
    GGAAGGAAAA ACTTGGGAGG AGGCGAGGAA GAACCGAAGA AGCAGCAGAG 
    CAGAGATCAC CTGCGATTGC GAGGGGAGGA GGCAGCGATG TGGCGGCGGC 
    AAGTGGGTGC CCTTCTTCTC CGGCACCGAT CCACGCCTTC CTCCACCCTC 
    CGCCACCATC TCCCCCTCCC CGTCCCCGAC CAGAGCCCAC CTCTCGCTTC 
    CAATCTTCTG CTCCGCCTCT TCACTTCTCA ATCTGGAGAG GGGGGTGATG 
    GTGCCACCAA GCCCTTCATT GCTTTCGTCT TAGGGGGTCC CGGGAGTGGG 
    AAAGGTACGC AATGTGTCCG GATCGCTTCT GATTTTGGGT TTGCTCATTT 
    GAGTGCTGGT GACCTTCTAC GGAGTGAAAT TTCAACTGGC AGTGAGAAAG 
    GGGAGTTGAT CTTAAATATA ATAAAAGAAG GGAAGATTGT TCCATCAGAG 
    ATTACTGTTG AACTGATTAG AAAAGCTATG GAATCGAGCG ATGCTAAAAG 
    GGTTCTTATT GATGGTTTCC CAAGGTGTGA GGAAAACAGG ATCGCCTTTG 
    AAAGAATAAC TGGAACAGAA CCAGACCTTG TGATTTTCTT TGACTGCCCT 
    GAGGATGAGA TGGTTAAACG TTTACTAGGC CGTAACCAGG GACGAGTGGA 
    TGATAACATT GAAGCAATCA AGAAGCGCCT AAAGGTGTTT GAGAGTCTAA 
    ATATTCCTGT TGTTGACTAC TACACTTCAA GAGGAAAGGT TCACAAGATA 
    AATGCAACCG GAACTGAAGA AGAAATCTTT GGAGCAGTCC ACAAGCTGTT 
    TTCCTCCTTA AGGTTTTGAG ACTTTTGTCT TCCACATAAG CAGGGGCCTT 
    TGGCTGGAAG GACATCTTGT AGGAAGACCC ACTTTGTCTA GCATCCAAAA 
    GTTCTCTCTA TTTCTCTCGT GTTCTTTTGG AAGCCTCACG TCTTTATTAA 
    AACCATTGTA TATATGTTTC ACTATTATGA ATGCCACCTG GTAATGGCTG 
    GTGCTGACCT TCACGTTATC CTTGTCATGC CACAGCATGA AGAAGCATGA 
    ACAATAGTAT GCTATTGTTG CACAGTGCTG TAACGCATTT TGGTCACAAT 
    AATCCTACAA ACCTTTTGCT

    Gene models with high sequence identity

    1. AT4G25280.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 2e-67; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UMP-CMP KINASE (UMP-CMPK) 2e-95
    HMMPanther Adenylate kinase 2e-95
    HAMAP Adenylate kinase 22.999
    HMMTigr UMP-CMP kinase 2.3e-104
    Gene3D no description 4.9e-55
    FPrintScan Adenylate kinase 1.4e-27
    FPrintScan Adenylate kinase 1.4e-27
    FPrintScan Adenylate kinase 1.4e-27
    FPrintScan Adenylate kinase 1.4e-27
    FPrintScan Adenylate kinase 1.4e-27
    PatternScan Adenylate kinase 0
    superfamily P-loop containing nucleoside triphosphate hyd 3.9e-46
    HMMPfam Adenylate kinase 2.7e-46

    See the detailed result >

    AT4G25280.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G26667.3); Has 14028 Blast hits to 13841 proteins in 4915 species: Archae - 98; Bacteria - 9051; Metazoa - 1267; Fungi - 476; Plants - 454; Viruses - 0; Other Eukaryotes - 2682 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR