K33504

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33504

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33504

Determination of introduced cDNA(s)

  • J033113H06 - Rice Full-length cDNAs - Original: J033113H06

    full reading [+] show sequence

    Nucleotide sequence: J033113H06 - full reading 
    GAGTCTTCCA AAAAACAATC GACCACAGCC TTACCTGGTG CTGGTGAGGT 
    GAGCAGAGCT ATCCCAATTC CAATTCCAAT TCACAATTCC CAAAGTGGAG 
    GAGAAGATGG TGGCGCCATC GCCCGACGCC GGGAAGCCGC TGGTGATCCT 
    GCTGCGGCCG CTCTACCCGG AGTTCGCTGC CGCGCTGGAC GGCCGCTTCC 
    GCTTCGTGCT TGCCGCCGAC GCCGACGAGG GCAACGCAGC AGAGGCGAGG 
    GCCGTGCTCG TGCCGGCTCT GACGCCTGTG TCCGCAGATC TCGTGGCTAG 
    GCTCCCCAAG CTGGAGATCG TGGTGGCCAC GTCCACCGGC GTTGACCACA 
    TCGACCTCGA CGCGTGCCGC CGCCGCGGGA TCAGCGTCAC CAACGCCGGC 
    GAGGTGTTTG CCCCCGACGT GGCGGACTAC GCGGTCGGGC TCGTCGTCGC 
    CGTGCTTCGC CGCGTGGCCG CCGCCGAGGC CTACCTCCGG CGAGGCAGGT 
    GGGCGGCGGA CGGTGACTAC CCTCTCGCGA CCAAGGTGAG CGGCAAGCGG 
    GTGGGGATCG TGGGGCTGGG AAGCATCGGC GGCCTGGTGG CGCGGCGGCT 
    GGCGGCGTTC GGCTGCGTGA TCGCCTACAA CTCGAGGTCA CCGAAGGCGT 
    CGGCGCCGTA CAAGTTTTAC CCCAGCGTGC GGGAGCTCGC CGCGGAGAGC 
    GACGTGCTGG TGCTGAGCTG CGCGCTGACG GAGGAGACGC GGCGCATGGT 
    GGGCGGGGAG GTGATGGAGG CGCTGGGGAA GGGCGGCGTG CTGGTGAACG 
    TGGGGCGCGG CGGGCTGGTG GACGAGGCCG AGCTGGTGAG GTGCCTGCGG 
    GAAGGGGTGC TCGGCGGCGC CGGGCTGGAC GTGTACGAGA ACGAGCCGGA 
    GGTGCCGCCG GAGCTGTGGG GGATGGACAA CGTCGTGCTG TCGGACCACC 
    GCGCGGTGAT CACGCCGGAG TCCATCCAAG GCGTCGTCGA CGTCGTCAAG 
    GCCAACCTTG ACGCCTTCTT CTCCGGGAAG CCTCTCGTCA GCCAAGTGCA 
    GCTCTGAACG TACTACAAAC AAGTACACTC AGTTTCTGAA CCTCAACCTG 
    CATTCTCAAC CTGAAAAATA ACAAGGGACA AGTTGTTGCT TATTCATGTT 
    TGTATGTATG CATATGCTGC GATTTCGATC TGAGCCAATC ATACATAAAT 
    TGGGAGGATA ATCTGAGATG ATTACACATT GTTGTGTTCA CTGATTTGCA 
    AGCAGCCCTG TATCTTGTTG TTGTAACACA CATCAGAGTA AACTCAATCA 
    ATACTCCATT CTTGTGGAGT ATTATTCAAT GTCTTAATTT TCTTTAGGC

    Gene models with high sequence identity

    1. AT1G12550.1 [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
      E-value: 2e-65; Score: 246.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 1.5e-52
    superfamily Formate/glycerate dehydrogenase catalytic dom 3.7e-30
    HMMPanther GLYCERATE DEHYDROGENASE 7.1e-136
    HMMPanther 2-HYDROXYACID DEHYDROGENASE 7.1e-136
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 9e-49
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4.3e-21
    Gene3D NAD(P)-binding domain 5.4e-50

    See the detailed result >

    AT1G12550.1

    Model type
    Protein coding
    Short Description
    D-isomer specific 2-hydroxyacid dehydrogenase family protein
    Computational Description
    D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT2G45630.2); Has 29393 Blast hits to 29385 proteins in 2729 species: Archae - 468; Bacteria - 18116; Metazoa - 729; Fungi - 1168; Plants - 597; Viruses - 5; Other Eukaryotes - 8310 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR