K33516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33516

Determination of introduced cDNA(s)

  • J013001C11 - Rice Full-length cDNAs - Original: J013001C11

    full reading [+] show sequence

    Nucleotide sequence: J013001C11 - full reading 
    GCTCTCCTCC CCCACTCCAC CGCCACCGCC GCCGTCGCCG CTGCCGCCGC 
    CGCCGCGCGA GGAGGACGGG CGGATCTCCC AATGAGGTGT GAGGCTTGTT 
    GATTGGGGAG CTGCTGGTTG TAGTTTGCAA TTGCAAATGG TGGATTCCTC 
    GGAAGGGCTC CGACGGCTCG CCGCGTTGCT GTTCAAGTGC TGCAGCCTTG 
    ACAGCTCCAA TCGTCCCAAC GGCCTGCAGG ATCCTGAACG GTTGGCGAGG 
    GAAACAGTTT TTAACGTAAA TGAAATAGAG GCGCTGTATG AGCTGTTCAA 
    GAAGATTAGC AGTGCTGTGG TTGATGATGG CTTGATCAAT AAGGAAGAAT 
    TCCAACTGGC ACTGTTTAAC ACCAACAGAA AAGACAGCAT GTTTGCTGAT 
    CGGGTATTTG ATTTGTTTGA CACGAAGCAC AATGGGATTC TTGGATTCGA 
    AGAATTTGCA CGGGCTCTTT CTGTGTTTCA TCCCAATGCT CCAATTGATG 
    ACAAAATTGA TTTTGCTTTC AAACTTTATG ATCTCAAACA ACAAGGTTTC 
    ATTGAGAAGC AAGAGGTGAA GCAAATGGTG GTCGCCACAC TTGCTGAATC 
    AGGAATGAAC CTTTCAGATG AGATTATAGA AGGCATTATT GACAAGACAT 
    TTGAGGAAGC AGATACAAAG CATGATGGGA AAATTGACAA GGAGGAGTGG 
    CGCAACCTTG TGTTGAGGCA TCCATCTTTA TTAAAGAATA TGACACTCCC 
    ATATCTCAGG GATATAACTA CAACATTTCC AAGTTTTGTA TTCAACTCCC 
    AGGTTGAGGA CGCATGAGGT CAAGCTTCAG ACCATATTCT AGGGTCCAGT 
    TCGTTTTATT TCATTTTGTT GATATCTTTC TCGTGCTTGG AACAAACTTT 
    TATGATTGCT CCGCTTCAAG ATGTGAATCC GTAGCAAGGA TGAAGTTTTT 
    ACCATTTTTT ATGCATATAC TTGAAGATGG CCTTCAACTC TTCATGTGTA 
    GACTTGTAGG ATGAACCGTT TCTCGTGATG TAGAAATGTT CTTCAATCCT 
    AAGATAAACG GTTGCCTCTA CCGTC

    Gene models with high sequence identity

    1. AT4G26570.1 [+] show detail - calcineurin B-like 3
      E-value: 5e-103; Score: 371.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily EF-hand 6.3e-50
    FPrintScan Recoverin 1.9e-05
    FPrintScan Recoverin 1.9e-05
    FPrintScan Recoverin 1.9e-05
    HMMSmart Calcium-binding EF-hand 1.6
    HMMSmart Calcium-binding EF-hand 1.9
    HMMSmart Calcium-binding EF-hand 0.53
    ProfileScan EF-HAND 2 11.78
    ProfileScan EF-HAND 2 11.305
    ProfileScan EF-HAND 2 11.278
    Gene3D EF-hand-like domain 4.4e-55
    HMMPanther Calcineurin B protein 6.6e-140
    HMMPanther CALCINEURIN B 6.6e-140

    See the detailed result >

    AT4G26570.1

    Model type
    Protein coding
    Short Description
    calcineurin B-like 3
    Curator Summary
    member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins)
    Computational Description
    calcineurin B-like 3 (CBL3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Calcineurin B protein (InterPro:IPR015757), Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 2 (TAIR:AT5G55990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR