K33648

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33648

Determination of introduced cDNA(s)

J033138E20 - Rice Full-length cDNAs - Original: J033138E20

full reading [+] show sequence

TGCTCGCTCG CCGTCGCCGT CGCAGGAGAC TCCGGCGAGC GCGTTGACGT 
GGCCATGTCG GGGACGGGGT GCTTCCCGGC GGGGGAGATG GCGGCGGTGG 
CGAGGGTGTG CCGGGACGGG GCGGCGGCGG CGAGGCTCAA GACGGGCTCC 
CTGCTCGCCA TCCTCGTGGC GAGCGCCGTC GGCATCTGCC TCCCCGTGGC 
GCTCACGGGG GCGTTCCGCG GGAAGGCCGG GTACGCGCGC GGCCTCCTCC 
TCGTCAAGTG CTACGCCGCC GGGGTCATCC TCTCCACCTC GCTCGTCCAC 
GTCCTCCCCG ACGCGCACGC CGCGCTCGCC GACTGCGCCG TCGCCACGCG 
CCGCCCGTGG CGGGACTTCC CCTTCGCGGG CCTCTTCTCC CTCGTCGGCG 
CGCTCCTCGC CCTCCTCGTC GACCTCTCCG CCTCCTCCCA CCTCGAAGCC 
CACGGCCACC ACCAGCACGC GGAGGAGGGG GAGTCGCCGC CGCCGCCGCC 
GCCGACCCAC CAACCCTACG CCCCAATCCC CACCACCAAG AAGTCCCCCG 
TCTTCGAGCT CTCCGGCGAG ATGAGCCCCA AGAAGCGCGC GCACTCAGAC 
GACACGGACC GGGACGACGT GGCGCTCTTC GGGGCCAAGA GCGCGGTCCG 
GAGCGACGAG GTCGTCGTCG CCCCCCGTGT CGGCTGCCAT GGGCACCACG 
ACGTGGTGGA GGTTGGGGAG GAAGGAGGAG GAGGGGAGGA GGAGGAGGCG 
AGGAGGAAGC AGAAGATGGT GTCCAAGGTG CTCGAGATTG GGATCGTGTT 
CCACTCGGTC ATCATCGGGG TCACCATGGG GATGTCTCAG GATGTCTGCG 
CCATCCGGCC GCTCGTCGTC GCGCTCTCCT TCCACCAGGT GTTCGAAGGA 
ATGGGCCTCG GCGGCTGCAT TGCGCAGGCA GGTTTTGGGA TTGCAACGGT 
GGGTTACATG TGCGTAATGT TCTCGGTGAC AACACCATTG GGAATACTTC 
TTGGAATGGC AATATTCCAT ATGACTGGCT ATGATGATAG CAGTCCAAAT 
GCCCTAATAA TAGAAGGGCT CCTTGGCTCA CTTTCTTCTG GAATCCTTGT 
CTACATGGCA CTTGTCGATC TCATTTCTCT TGATTTCTTC CACAATAAAA 
TGATGTCATC ATCTAATAAA TTGAAAAAGG TCTCTTATGT CGCATTAGTG 
CTTGGATCTG CATCCATGTC TATATTAGCT CTCTGGGCAT AGGTCATAGG 
TGCAACCAGA GTGAAATACG GTGTATTGAT CCTTTGTAGG AAGAAATGGA 
TGTTTTGGGA GTCAGGACTT CCCTCATGTA AATTAAACTT CCACATAATG 
GGAAACTTAA AAATTCTTGA ATGCCTTTTG ATACTGTGAG CCATTTTCGT 
CTCCTGATTA CCATGGACAA TCAAAACGTA CAGTGATTTA TCTTTC

Gene models with high sequence identity

AT2G30080.1 [+] show detail - ZIP metal ion transporter family
E-value: 2e-52; Score: 204.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Zinc/iron permease	4e-56
HMMTigr	Zinc/iron permease, fungal/plant	2.9e-131
HMMPanther	ZINC/IRON TRANSPORTER, PLANT AND YEAST	1.6e-99
HMMPanther	ZINC/IRON TRANSPORTER	1.6e-99

See the detailed result >

AT2G30080.1

Model type: Protein coding
Short Description: ZIP metal ion transporter family
Curator Summary: member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.
Computational Description: ZIP6; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 7 precursor (TAIR:AT2G04032.1); Has 1739 Blast hits to 1619 proteins in 263 species: Archae - 0; Bacteria - 69; Metazoa - 337; Fungi - 628; Plants - 518; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
Link: InterPro Scan - TAIR