K33729

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33729

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33729

Determination of introduced cDNA(s)

  • J013001A23 - Rice Full-length cDNAs - Original: J013001A23

    full reading [+] show sequence

    Nucleotide sequence: J013001A23 - full reading
    TGGATGTGAT GTGATTAGTT GACGAGACGG GGAGGGGCGT CCAGCCAAAG 
    AGGATCGAAT CGCCATCAGC CACCGCCGCC GCCGCCGGAG ACCTCCGATC
    CGCCGCCTCC AATCGCCGAC GATGGAACCG CTCAATCATC CAAGGTGACG
    CATCGGCATC GCCTCTTCCA ATCCCCCTAT TCATCCATCC ACTAAATTCG
    TCATCATCGC CATGGCCACC ACCAAATCCT TTCTCCCTCC CCCATTCATC
    GCCCTCTCTT CGAACCCTCG TCCCACCACC CTCGCTCCCA CTCCCAATCC
    CAGGCCCCGC CGCCGCAATT CCCTCGCTAT CTGCTCCGCC TCCGCCTCGG
    GCGACCCTTC TCCCACACCC GAGGCCGAGG GCGGCGGCAA CCCGCTCCTC
    GCGCTATGGC GCCGCACGCT CCACCCCCTG GGTGACTACG GCTTCGGCAA
    GCGCAGCGTC TGGGAGGGCG GCGTCGGCCT CTTCATGGTC TCCGGGGCCG
    CGCTGCTCGC CCTCGCCCTC GCCTGGCTCC GGGGATTCCA GCTCCGCGCC
    CGCTTCCGCA AGTACCAAGC CGTCTTCGAG TTCACCCAGG CCTGCGGGAT
    TTGCGTCGGC ACCCCCGTCC GCATCCGCGG TGTCACCGTC GGCAACGTCG
    TCCGCGTCGA CTCTTCCCTC AAGAGCATCG ATGCTTATGT TGAGGTTGAA
    GATGATAAAA TTATTGTGCC CCGCAATTCA GTGGTTGAGG TGAATCAGTC
    TGGTCTTCTA ATGGAGACAC TGATTGATAT AACACCAAAA GATCCACTCC
    CTACACCTTC AGTTGGTCCT CTTGACCCAG ACTGTTCCAA AGAAGGTTTA
    ATTCTCTGTG ACAAAGAGAG GATGAAAGGA CAACAAGGAG TAAGCTTAGA
    CGCACTGGTT GGAATATTTA CTCGTCTAGG AAGAGATATG GAGGAAATTG
    GTGTTCACAA AAGCTACAAG TTGGCTGAAA AAGTAGCATC AATAATGGAA
    GAAGCGCAGC CTCTTCTTTC ACGGATTGAA GCATTAGCTG AAGAAATTCA
    ACCTCTGCTT TCTGAGGTTC GTGATAGTGA TCTGGTGAAG GATGTCGAGA
    TTATAGCTAA AGGTCTGGCT GATGCATCCG GTGATTTAAG AAGGCTGAAG
    TCTTCCATGC TTACCCCTGA GAACACCGAT CTTATTAAGC AGTCTATTTT
    CACCCTTATC TTTACTCTGA AGAATATTGA GAGTATCAGC TCAGACATCT
    CTGGTTTCAC CGGTGACGAC GCGACAAGGC GGAACATCAA GCTGCTTATC
    AAGTCACTTA GCAGACTGTT GTGATTGCTC AGGAATAACA CGGGGGAGCT
    TTCTCCATTG GGAAGCGCTG ATACAGGAAT TTGCTATTAG TGTAGCATTT
    CTTGAAAAAA GGAAGAAAAT GAGAGGAAAG CGCAGGTTGA GAATGAGATT
    AGAAAGAGGT CATTTGGAGA GAGGGGAACC AAGTTTTTGA ATAGTGGAAT
    TATAGTCTCT GGTTTTGTTT TCCAAGTTTC CTGCATTCCC GGATATTATT
    AAAACAAGAA AAGCACGGGG AAATGTGTAA ATCTCCGTTA GTTGTGTAGG
    GCATCTTCTT AATTTGTTTT TGTTTTTTTT TTTTGGGAGG CAGTGTAGGC
    CGGTTTTTGT TTGATATTGT GATGTTTCAT TCTTGTGCCC TTGCGCAAAG
    GTAACCAGCA AGGAATGCAT AAATACATGA AAACTTTGTT GTCTG

    Gene models with high sequence identity

    1. AT3G20320.1 [+] show detail - trigalactosyldiacylglycerol2
      E-value: 2e-117; Score: 420.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G20320.1

    Model type
    Protein coding
    Short Description
    trigalactosyldiacylglycerol2
    Curator Summary
    Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.
    Computational Description
    trigalactosyldiacylglycerol2 (TGD2); FUNCTIONS IN: phospholipid binding, lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mammalian cell entry related (InterPro:IPR003399); Has 660 Blast hits to 610 proteins in 215 species: Archae - 0; Bacteria - 436; Metazoa - 0; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR