K33745

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33745

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33745

Determination of introduced cDNA(s)

  • J013129F19 - Rice Full-length cDNAs - Original: J013129F19

    full reading [+] show sequence

    Nucleotide sequence: J013129F19 - full reading 
    GACCCAACTC AAAGTTCACA CTTCACACAC CACCCAGCCA AACAAAGCAG 
    AATTTCCATC ATGTGCACTC TGGGCAAGCA GAGGGGCAGA GCATGGTAGG 
    GACTAGGACT TGCGAAGTTG GGATTGTAAG ATTACCAGAG TTGGAGCATT 
    GGAGGGCAGC GAGGGCCTGA TGTCTGTCAA CAAAACGGTG AAACTGACCA 
    TGCCCGTTCT ATTGGCATTG TTGCTGTTGT CCTATGGAAC TGGAAGCATT 
    CGTTGCACGA CGATCGCTGG GAACAGCACG GACGTGCTCT CGTTGCTCGA 
    TTTCAAAGCC ACCACCAACG ATCCAAGAGG AGCCTTGAGC TCCTGGAACA 
    CCAGCATCCA CTACTGTTGG TGGAGCGGCG TCAAGTGTAA GCCGAATACC 
    CGAGGGCGAG TCACGGCTCT GAAACTCGCG GGACAAGGTT TATCAGGCCA 
    AATCACCTCC TTTCTTGGGA ACTTAACGGA CCTTCACACA CTTGACTTGT 
    CCAGCAATAA TTTCTCTGGC CAAATACCCC CTTTAACCAA TCTTCAGAAG 
    TTGAAATACC TTCGTTTGGG CCAGAATTCT TTGGATGGTA TAATTCCAGA 
    TTCACTCACA AATTGCTCCA ATCTATTTTA TTTAGACCTC TCTAATAACA 
    TGCTAGAGGG CACAATCCCC CCGAAAATAG GTTTCTTAAA TAATCTCTCT 
    GTATTGGCCT TCCCTTTGAA TTTTCTCACC GGGAACATCC CCTCAACCCT 
    TGGCAATCTT ACAAACTTGA ATATAATGCT CCTCGCAAAT AATAAGATTG 
    ACGGAAACAT TCCTCAAGAA CTGGGGCAAC TGTCAAACTT GGGGTGGTTG 
    TCCCTAAGTG AAAACAACCT ATCAGGTGGT TTTCCGCAGG GATTCTTCAA 
    AAATCTATCT TCTCTTCAAA TATTAAGCAT TCAGACGACC TTGCTTGGTG 
    GCACATTGCC ATTTGACATT GGCAATACAC TCCCTAATCT CACAAAACTT 
    TTCTTGGCTG ATAACATGTT TGAAGGTCAT ATCCCAGCTT CTTTAGGCAA 
    TGCATCATTG CTACGAGGGA TAGATCTATC CTTAAATAAT TCTACTGGCC 
    ATATTCCCAA CTCTTTTGGA CGGCTTTCAG GTTTGTCTAC ATTAAACCTT 
    GAGACAAACA AGCTTGAAGC TAGGGACAAC CAAGGTTGGG AATTCTTAGA 
    AGCGCTCAGA GGCTGCAACA ATTTAAATGT GCTCTCACTA GCTGACAACC 
    TGTTATTTGG GGACGTACCA AATTCAATTG GTGGCCTATC CATCAACCTG 
    ACAATTTTAT TGTTGGGCGG AAACAACCTA ACAGGGATAG TTCCTCTAAG 
    CATTGGGAAC CTTCAAGGCT TAATTTCATT GGGGCTAGAT AATAATGGTT 
    TCAGTGGTAC GATTGAGTGG ATTGGAAAAC TGAAAAACTT GCAATCTTTA 
    TGCCTTCGAA ATAACAATTT CACTGGGCCT ATTCCATACT CCATTGGCAA 
    GCTTACACAG CTGACAGAGC TCTATCTGCG AAACAATGCA TTTGAAGGTC 
    ACATACCGCC CTCCTTGGGA AACCCTCAAC TACTGTTAAA GCTGGATCTT 
    AGCTACAACA AACTTCAAGG TACCATACCT CTAGAGATTA GTAACCTTAG 
    ACAACTCATC TACCTACAAC TTGCATCAAA CAAGCTTAAT GGGGAAATAC 
    CTGATGCATT GGGGATGTGC CAAAACTTAG TAACCATCCA AATGGACCAA 
    AACTTTCTCA GAGGAGACAT GCCAATTTCT TTTGGCAATC TAAATAGCCT 
    AACCATACTA AATATATCTC ATAACAACTT ATCAGGCACC ATCCCAGTAG 
    CACTAGGCTA TCTACCCCTA CTAAGCAAGC TGGACCTTTC TTACAACAAC 
    CTCCAAGGAG AAGTACCAAC AGTGGGAGTA TTCAGAAATG TGACATCTGC 
    TTATCTCGAT GGCAATTCAA GACTTTGTGG AGGAGTGACA GATCTCCATA 
    TGCTCTCATG CCCTCAAGTT TCTAATAGAA TAAAAAGGGA TTCTGATATA 
    ACAAAGAGGG ACTACAATCT GGTCAGATTA TTAGTACCGA TATTTGGCTT 
    TGTGTCACTC ACAGTGCTGA TATACCTTAC ATGCCTAGCA AAGAGGACAT 
    CAAGAAGAAC AGACCTATTG TTGCTTTCTT TTGGAAAGCA GTTCCCTAGG 
    GTTTCTTACA AGGATCTAGC CCAAGCTACA GGGAAATTCT CAGAGTCAAA 
    CTTAATTGGA AGAGGAAGTT ACAGTTCAGT ATATAGAGCG AAGTTAGCTC 
    CGACTAAACT ACAAGTTGCT CTTAAGGTTT TTGACCTTGA AGTGAGATGT 
    GCAGATAAAA GTTTCTTATC AGAATGTGAG GTCTTGAGAA GCATTCGACA 
    TAGAAACCTT CTTCCTGTCC TAACTGCATG TTCAACGATA GACAATAGTG 
    GCAATGCTTT CAAAGCTCTG ATTTATGAAT ACATGCCTAA TGGGAATTTG 
    AATATGTGGT TGCATAAACA ATTTGCAAGT GTTGCTTCAA AATGTTTGAG 
    TTTAGCTCAA AGAGTGAATA TAGCTGTGGA CATTGCTAAT GCATTGTCCT 
    ATTTACACCA CGAATGTGAA AGGTCTATTG TCCATTGTGA TTTGAAGCCA 
    ACTAATATTC TTCTTGATGA TGATATGAAT GCATATTTGG GAGACTTCGG 
    C

    Gene models with high sequence identity

    1. AT3G47570.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 2e-156; Score: 550.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Toll-like receptor, leucine rich repeat-containing 5.5e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 5.5e-05
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 1.8e-174
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.8e-174
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    ProfileScan Protein kinase, catalytic domain 26.973
    HMMPfam Serine/threonine-protein kinase-like domain 1.2e-27
    HMMPfam Leucine-rich repeat 0.1
    HMMPfam Leucine-rich repeat 0.28
    HMMPfam Leucine-rich repeat 0.15
    HMMPfam Leucine-rich repeat 0.13
    HMMPfam Leucine-rich repeat 0.46
    HMMPfam Leucine-rich repeat 0.074
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 4.2e-09
    superfamily L domain-like 7.6e-61
    superfamily L domain-like 7.3e-60
    superfamily Protein kinase-like domain 2.5e-47
    Gene3D no description 2.1e-50
    Gene3D no description 3.6e-22
    Gene3D no description 2.7e-50
    Gene3D no description 7.5e-21
    HMMSmart Leucine-rich repeat, typical subtype 42
    HMMSmart Leucine-rich repeat, typical subtype 55
    HMMSmart Leucine-rich repeat, typical subtype 44
    HMMSmart Leucine-rich repeat, typical subtype 270
    HMMSmart Leucine-rich repeat, typical subtype 7
    HMMSmart Leucine-rich repeat, typical subtype 100
    HMMSmart Leucine-rich repeat, typical subtype 350
    HMMSmart Leucine-rich repeat, typical subtype 22
    HMMSmart Serine/threonine-protein kinase domain 6e-06
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.0022

    See the detailed result >

    AT3G47570.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47580.1); Has 213556 Blast hits to 133070 proteins in 4776 species: Archae - 194; Bacteria - 22980; Metazoa - 68117; Fungi - 10236; Plants - 86850; Viruses - 328; Other Eukaryotes - 24851 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR