K33802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33802

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33802

Determination of introduced cDNA(s)

  • J033142K22 - Rice Full-length cDNAs - Original: J033142K22

    full reading [+] show sequence

    Nucleotide sequence: J033142K22 - full reading 
    TGGTAGTGGA GTACTAGTTG TAGCCCATGG GGATCACGGA GGAGCAGCGC 
    CGCCGCATCG AGGCCAACCG CCTCGCCGCC CTCGAGAGGC GCAAGCGCTT 
    CGCGGAGGCC GCCGCCGCCG ATGCCTCGGT GGGGTGGAGG CTCGCCAAGT 
    GCCCAAGATT CGCTCCGCCT CCTCCTCAGC CGACGCTGCC TCCTCCTCCT 
    CCGCGGACAT TGCCTCCTCC TCCTCCTCCG CCGCCGCCGC AGCCGCCGGT 
    GGGGTTCAAA GTGGTGCTGG AGGTGTGCGG CCCCGAGGAT TTCTCGGTGG 
    CGGTGGGGCC CGCCGAGGGC TTCGCCTACC CCGGCGAGGC CGAGTGCCTC 
    CGCGCCGTCC AAGATTGCAT CTCTTCGGCT GCACCATTCT CTACAACACA 
    AAGTCAAAGT GGCCATATTT TCTCCGTATT TAAGCTCATG GACTATGAGC 
    CCGTGTTAAA ATGCCTGAAG AAGTTGCCTG GAGTTGCTGT GCAAGATATA 
    CCTTACAAAA CAAGGAATGT TATCAAGAAT CTCCCTAAGT TCTTTGCCGA 
    AAGCTGCGCT TCTGATAAAG AAGTTGACGG GCTTCTCATG AAGTTGCCAC 
    AACACTTACG AGATGCACTC CTACCCTTTC AACTTGAAGG TGTGAAGTTT 
    GGGCTTCGAA GGCATGGGCG CTGCCTTATT GCAGATGAGA TGGGGCTTGG 
    TAAGACTCTC CAGGCAATTG CAATAGCTTG TTGCTACAAG GATGAGGGCC 
    CAGTGTTAAT AGTGTGTCCA GCTGTTTTGC GTTATACATG GGCAGAGGAA 
    TTGGAACGAT GGGATCCTTC ATTTCTGCCA AAAGATATTC ATCTTGTGTT 
    TGGTCACCAA GACAGTCTTG AACGTTTAGG AGCTTGCCCA AAGGCAGTGG 
    TCATTTCATA TCAGATGCTA AGCCGTCTTC GCAAAAGCAT GATGAATAGG 
    AGATGGGCAC TGATGATTAT CGATGAATCA CACAACATAC GCTGCACAAA 
    GAAAAAACAC GAAAAAAATG AGACACAGGC TGTACTGGAA CTAGCGCCAA 
    ATGTCAGTCG CATTGTGCTG CTCTCTGGGA CACCCTCTTT GTCAAGACCT 
    TTTGACATCT ATCATCAGAT AAATATGCTA TGGCCCCATT TGCTTGGCAG 
    CAATAAATTT GACTTTGCGA ACAAATATTG CTTGCTACAT ACTGTTCAAG 
    GCTGCAATGG GAGAACTTAC CAGGATTTTT CAAAGGGTGC TCGGTTGACA 
    GAGTTAAATG TTTTGCTCAG TCAGACTCTC ATGATTAGGC GCTTGAAGGA 
    GCATTTGTTG AATGAACTAC CTCCCAAACG TCGACAGATT ATTTGGTTGA 
    AGCTGAATGC ATCAGATATC AAGACAGCTA TATCTTGTAT CAAAGGGGTG 
    AACACTAGTG ATGAGATTCC TACAATTGCC TCGCCAGACA ATAGCAATGA 
    CTCTGAGGAG GTGAACATGG AAGAAGCTGA TGGTTGCAAG AAATCTCCAA 
    GGAATCTCAC TACACAAGAA ATTGGTATTG TGAAAATACC TGGGTTCAGC 
    GAGTGGTTCT TAAATCATTT CATCATGAAA GAACCAGCTG ATAATGGTAG 
    TCTGGACTCT CAGTCTAATT GCCAGAAAAC AATAATTTTC GCCCATCATT 
    TAAAGGTCCT AGATGGAGTT CAGGTGTTTG TCACAGAGCA GAGGATCAAG 
    TATGTCCGCA TTGACGGAAG CACATCTCCT AGGGAAAGGA AAGATGCTGT 
    CGATTCTTTC CGTTTAAATC CAGAGGTAAT GGTTGCAATT ATTGGAATTA 
    CTGCTGGCGG TGTTGGTTTA GATTTCTCAT CTGCTCAGAA TGTTGTTTTC 
    GTGGAGCTCC CAAAGTCAGC TTCAGAGTTG CTTCAGGCTG AGGATAGAGC 
    TCATAGGCGA GGTCAAACAA ATGCTGTCAA CATATATATA TTCTGTGCAA 
    GGAACACATT AGATGAGTCA CATTGGCTTC ATTTGAACCA GAGTCTGTTC 
    CGTGTCTCAT CATTGATGAA TGGAAAGAAA GATGCTATAA GAGAGATTGA 
    GGTTGATCAA GTTTACCACC TTGAGGAAAG CAGTAAATCT GAGGGAAAAT 
    CACAGCTTGG ATTTCTTCCT TTGGAGAATC ATAATGCTGA TTGTGGGCAT 
    GGACCAGGAG AGAATGTAGA AAGTGATGAT ATGTCCATTG AGAATTTTCC 
    TGGCCTCAAC GATATGAATT TTGAGTCAGA TTTCTTCAGT ATTAGGACAA 
    TTCCTCTTCA CTTTGAGGAT GATAGCCTTC ATACGGTAAT GCAAAATTGT 
    CCATCTCCAA CAGCACATGA AGAGATAGCT TTTGATAGTT CTTCTATCTC 
    TCAAGCTTCA GTTATTTGCC CTTCAATGTC AAGCGCTAAA TCAGTAAAGG 
    CTCGTCGGAG GCTTTCTGAA ATTTTTCAGA CTTTAGGCCT TCCAGCAACT 
    ACAGACTGCA ATATTGAAGA GAAGTTTCTG CGATTTGAGG TTAGCCAGCA 
    CACAGGCCGA ATTCATTTGT ACATATGTGT TCCAGGGCAT GATTCAAGAC 
    CCAGACCACT TTTTGAAAAC TTCCTGCCAG AAGAAGTAGA GTCACCTTTA 
    TGTTCTGATA ATACCATGAA AACAAGTAAT CGTCTCTTGA AGAGGGATCC 
    TGCATTTTGC AATACGTTCA AAGCGTTCGT GAAGGAATGG TTGGCGCTTA 
    GACCAATTGA GCAGAAGAGA CTACTGGGAA AGCCCTTACA GCTTCCCTTG 
    AGCCTTGAGT TGTGCTACCT GAAAGATACC AACAACCACA GCACAAAAGG 
    GTTGCTTAAA GGAGGAAGTA AGAGGCGTGT AACACCATGG TGTGATATTA 
    GTAATCCTTT GCCAGAAAAT GCTGAATGGA GAAAGGTGGT TTTGCATAAT 
    GGTACAAGTA GAGAGAGAGA GTACACCTCA AGGCTGGACT GTTCACGATG 
    AACCTCTCTG CAAATTATGT CAAGGACCTT GCAATGGGAG GCTTGCAAAG 
    TCACCTGAAT ATTTTGAAGA CCTGTTCTGT GGTCTGCCTT GCTTCGAGGT 
    GTTCAGATCG AGAACTAGTG GCAGGTTTGC ACGGCAGGCA CTATTTAAAT 
    TGAACATGGT ATATGCTCCA AGTGTAAACT TGACTGTCAC GAGCTTGTCA 
    AGAATATCAG ACCATTATGC AAGAAAAAGA GAGAAGAATA CATTAGGAAT 
    GTTGCTCCAA ATATTGCAAG TAGATTGAAA TTGCTAGATA AGCTTGTACA 
    TGAGCCAAAT GAGGGTAATG CTTGGCACGC AGATCATATA GTGCCTGTAT 
    ATAAAGGAGG AGGGGAATGC ACACTTGAGA ATTTGAGAAC TCTTTGTGTG 
    GCTTGTCATT CTGAGGTCAC CTGTGCACAG CAAAAGGAGC GAAAAGATTT 
    AACAAAGAAA GCTAAAGAGC TTCTGAAAAA CACCGTCAAT AATCAGCAGA 
    AGGATGAAGT TAGTAGTCCT GCCCTATTTC AAACTTTTTT TGAAAACATT 
    TTTCCTCTGA AGTGATGCCA TCTCTGAAAT TATTAAGATT ACAGTAACAC 
    AGTGACTCTC CTGTGCTTAC TGTTGATACT TTCTCATATA TTAGCTTCTG 
    TTACTATTGC CAGTTGGCTG TCATGCCATT TCTTAAGCAT GGTGAAGAAT 
    GATAATTTTG CGATCATTCT ACAAGGCAAA TC

    Gene models with high sequence identity

    1. AT5G07810.1 [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-con...
      E-value: 0; Score: 870.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 4.5e-22
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-21
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 18.903
    ProfileScan DNA/RNA helicase, C-terminal 12.939
    ProfileScan PROKAR_LIPOPROTEIN 6
    Coil coiled-coil 0
    Gene3D no description 5.8e-08
    HMMPfam SNF2-related 1.4e-33
    HMMPfam DNA/RNA helicase, C-terminal 2.8e-11
    HMMPfam HNH endonuclease 4.2e-11
    HMMPanther HARP (SMARCAL1)-RELATED 0.00019
    HMMPanther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATE 0.00019
    HMMPanther HARP (SMARCAL1)-RELATED 1.2e-20
    HMMPanther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATE 1.2e-20
    HMMPanther HARP (SMARCAL1)-RELATED 2.8e-205
    HMMPanther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATE 2.8e-205
    HMMSmart DEAD-like helicase, N-terminal 3.3e-20
    HMMSmart DNA/RNA helicase, C-terminal 2.8e-14
    HMMSmart HNH nuclease 0.00055

    See the detailed result >

    AT5G07810.1

    Model type
    Protein coding
    Short Description
    SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
    Computational Description
    SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), HNH endonuclease (InterPro:IPR002711), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor18 (TAIR:AT1G48310.1); Has 16904 Blast hits to 14939 proteins in 1977 species: Archae - 110; Bacteria - 5677; Metazoa - 3556; Fungi - 3371; Plants - 1315; Viruses - 123; Other Eukaryotes - 2752 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR