K33820

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33820

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33820

Determination of introduced cDNA(s)

  • J033093P08 - Rice Full-length cDNAs - Original: J033093P08

    full reading [+] show sequence

    Nucleotide sequence: J033093P08 - full reading 
    GGCATAGACC TAGCCAGCTA GCAACCGACA AGCCAAGGCG ACGGCAATGG 
    CGCCGACGAC GACGGCCACG GCGGCGGCGG AGCAGGCGCC GCCGCCGCAG 
    CATACGAGGA AGGCGGTGGG GCTCGCCGCG CACGACGACT CCGGCCACCT 
    CACACCCATC CGCATCTCGC GCAGGAAAAC TGGAGATGAC GACGTCGCTA 
    TAAAGGTGCT GTACTGTGGG ATTTGTCACT CTGACCTGCA CACCATCAAG 
    AATGAGTGGA GAAACGCTGT CTACCCAGTT GTTGCAGGGC ACGAGATCAC 
    CGGGGTGGTG ACCGAGGTGG GGAAGAACGT GGCGAGGTTC AAGGCCGGCG 
    ACGAGGTCGG CGTCGGGTGC ATGGTGAACA CCTGCGGCGG CTGCGAGAGC 
    TGCCGGGACG GCTGCGAGAA CTACTGCTCC GGCGGGGTCG TCTTCACCTA 
    CAACTCCGTC GACCGGGACG GCACGCGCAC CTACGGCGGC TACTCCGACG 
    CGGTGGTCGT CAGCCAGCGC TTCGTCGTGC GCTTCCCCTC CTCCGCCGGC 
    GGCGGCGCCG GCGCCGCGCT GCCGCTGGAC AGCGGCGCGC CGCTGCTGTG 
    CGCCGGGGTG ACGGTGTACG CGCCGATGAG GCAGCATGGG CTGTGCGAGG 
    CCGGGAAGCA CGTCGGCGTG GTGGGGCTCG GCGGGCTCGG CCACGTCGCC 
    GTCAAGTTCG CCAGGGCGTT CGGGATGAGG GTGACGGTGA TCAGCACGTC 
    GCCGGTGAAG AGGCAGGAGG CCCTGGAGAG GCTCGGCGCC GACGGCTTCA 
    TCGTCAGCAC CAACGCCAGT GAGATGAAGG CTGCGATGGG CACCATGCAT 
    GGCATCATCA ACACGGCCTC TGCAAGCACA TCCATGCACT CTTACCTGGC 
    ACTCTTGAAG CCCAAGGGCA AGATGATCTT GGTTGGCCTG CCTGAGAAGC 
    CTCTCCAGAT CCCAACCTTC GCTTTGGTTG GAGGGGGCAA GATACTAGCT 
    GGGAGCTGCA TGGGGAGCAT CAGTGAAACG CAGGAGATGA TCGACTTCGC 
    CGCCGAGCAC GGGGTGGCCG CCGACATCGA GCTGATCGGC GCCGACGAGG 
    TGAACACGGC CATGGAGCGC CTCGCCAAGG GCGACGTCAG GTACCGCTTC 
    GTCGTCGACA TCGGCAACAC CCTCAGGTCG GATTGACTAG GGAGCTCACT 
    GTCACTGGTC TCAGCTCTGT AGCATACCGG ACCTGCAATC CTGCAAAGTA 
    GTGCAATCTT CTTGCTACAA GACATACATA TCACCTCTAC TTGGTGTCAA 
    TAAATGTAGC AAAAGAGGTA CATTGTTGT

    Gene models with high sequence identity

    1. AT4G37970.1 [+] show detail - cinnamyl alcohol dehydrogenase 6
      E-value: 1e-103; Score: 373.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Polyketide synthase, enoylreductase 4.5e-05
    Gene3D no description 3.1e-53
    PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0
    HMMPanther ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED 4.6e-102
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 4.6e-102
    HMMPfam Alcohol dehydrogenase GroES-like 7.2e-28
    HMMPfam Alcohol dehydrogenase, zinc-binding 6.9e-19
    superfamily GroES-like 2.9e-46
    superfamily NAD(P)-binding domain 2.2e-38

    See the detailed result >

    AT4G37970.1

    Model type
    Protein coding
    Short Description
    cinnamyl alcohol dehydrogenase 6
    Computational Description
    cinnamyl alcohol dehydrogenase 6 (CAD6); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase 9 (TAIR:AT4G39330.1); Has 35385 Blast hits to 35371 proteins in 2946 species: Archae - 789; Bacteria - 23408; Metazoa - 1218; Fungi - 2700; Plants - 2633; Viruses - 3; Other Eukaryotes - 4634 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR