K33842

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33842

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33842

Determination of introduced cDNA(s)

  • J023003L17 - Rice Full-length cDNAs - Original: J023003L17

    full reading [+] show sequence

    Nucleotide sequence: J023003L17 - full reading 
    GATTGGAACG TATTCAAGCG GATAGGGATG ATCCAAGCCT ACCATTGGTC 
    ACTGCCCCAT TTGGGCATGC TTCACAGGAA GTTGTGAATT TATTGCTATG 
    TGGAGAGGCT GTGTCAAATG TATTTGATGG CAAGGTGGAC TTTGGTGGTG 
    GCATGTTCCT GAATGGGATA CCAAATGATG TTGAAGTTGG TTTCCTTACC 
    CTTCTGGAAT CACTAAACTT CTGCAAGGTT GGTCAATACT TAAAGTGCCC 
    GAAATGGCCA ATATGGGTGG TAGGAAGTGA AAGTCACTAC TCCGTCCTTT 
    TTGCCCTAAA TCCAAATGTT CAAGAAGAGA ATGAGCTGGA AGAGCGGGAA 
    TCTAAAATAA GGAGGGCATT TGATGCACAA GATCAAAGTG GAGGTGGAGG 
    CTTTATTAGC GTTGAGGGGT TCCAACAAGT TCTGAGGGAC ACTGACATAA 
    ATTTTCCTTC TGATAAGCTT GAGGACCTCT GTAATGCTGG CATTATAGTA 
    TGGAGTGAAT TCTGGCAGGG CTGCTACAAT TGGATAAAAG GGCTGGAGGC 
    ATGAAGGATC CTACAGGCCT TATGGGCAAG AAGCAATTCA CTATCTACCA 
    TTTCAATGGA ATCGCGAAGT CCGTGCTTAA TGGGAATGCT AACATTGGAG 
    GTTCAACAAT ACAGAGACCC AGACTGTGCA AGTTAAATGT CAGTGTCCCG 
    CCAAGGTGGA CTCAAGATGA GTATCTAGCT GATGTTGTAA GCGCGTCCAC 
    CAGCGGGAGC AAGGATGACA GTGTTCTTTC ACTTGCTCCA CCTGTTCAAA 
    CTTCTCAGCA TGCACCGTTG GTGGACTGCA TTAGAACCCG ATGGCCACGG 
    GCAGTTTGTA GCTGGGTTGG AGATATGCCT AGTATTGTCT GATGCCATGC 
    CGCGTGCTAG TCTGATTTTA AAGTGGCTAT TGCAGAGCAG GCTGCTTGAG 
    CTTCAAGGCC ATGAGGGAAG GAAGCCGCGA AAGTGACAGC TGCTACTGGA 
    CTCCTGGTGT TATCACTGTT CCAGCTGATG AATATATGAT TTTTCTTGGT 
    TGCGTGAATG ATCCTTTGAT GTAATTTTAT CAGGGACCCG AACATTCTTT 
    TTCCTATAAT GACATTAGCT GTATACTCCA TTTTATGAAT ATGTTTTCAG 
    TTCAAGATAC ATTCTTTTTG TACACACACA CCTTGTGGTT CTATTTTAAA 
    TCTGATAGAG AGTTGGTGAC TG

    Gene models with high sequence identity

    1. AT1G43690.1 [+] show detail - ubiquitin interaction motif-containing protein
      E-value: 3e-108; Score: 142.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily EF-hand 1.9e-06
    Coil coiled-coil 0
    HMMPanther UNCHARACTERIZED 3.6e-35

    See the detailed result >

    AT1G43690.1

    Model type
    Protein coding
    Short Description
    ubiquitin interaction motif-containing protein
    Computational Description
    ubiquitin interaction motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin interacting motif (InterPro:IPR003903); Has 368 Blast hits to 347 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR