K33943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33943

Determination of introduced cDNA(s)

  • J013000O17 - Rice Full-length cDNAs - Original: J013000O17

    full reading [+] show sequence

    Nucleotide sequence: J013000O17 - full reading 
    GATCGTCCTC CACTCCTCCG CCCTTTTGAC CCAACCCCAC CGACCCAACG 
    AACGCGAGGC CGCTTCGGCA ACCTCCTCCG CGCGATCCCC CAACGCCCGC 
    GAAACCCTAG CTCTCGCTCG CGCGGGGTGC GCCGATGCGG AGGTGGCTGG 
    CGGAGGGGGT CATGGAGCTG GCGGTGGGGG CGCCGGAGTC GAACTCCTCC 
    TTCTCCTCCT CCCCCTCGGG CGCGACGCCG TCGTCGGGGG GCCCGATTGG 
    TGGGTGTCGG GGTGCCACGG GACGGTGTAC AGCCTGGCGG TGATGCTCCC 
    GTCGTTGGCG TTCGTCGGGT TCCTGGCGTG GCAGGCGCGC CGGAGCTTCC 
    GCCGCCTCAG CTACGGCCGC TCCCACGTCG TCGTCGTCGC CTACTACGCG 
    CTCCTCTGGG CCGTCGCCGT CCTCAACCTC CTCTGGTGCT TCCTGCAGGC 
    GTGGCAATGT ATGCCTGATA GGGCGTTCTC ATGGAATGTG CTGTCTCTGT 
    TTACCAAATC AGGGATGTTA TTCTTGGAAG TTAGTCTCAT AGCATTTCTG 
    CTTCAAGGAA ACGAAACCAG TGGTTTTGAA TCTTTGGCAC GTACGTTTGT 
    TATCTCTGGA GCTGTAGTTG CTGCTGATGT ATTGCTCAAG ACTATATATG 
    TTTTTGGGTT TGGTGTCTCT TTGTTCATTG ATGTTGACCA AGGAACTGGT 
    GGGAAGTGGG GCCTATGGTT TCTACACAAA TTGGTGCTTA CTGGTGTCTA 
    TGGCCTGATT GTGTTCATGT ATCACTCAAG GTGGAGAGAC AGGTTACCTG 
    CAAAACCAGC ATATTATAAC TATGTCTGTG CGATGTTACT ACTGAATGGC 
    ATATCACTGT TTGGATGTTT CCTTGTTGCA ACTGGAGCTG GATTTGGTTT 
    ATGGTTGTAC AATCTCACCA GTGTATGTTA TCATTCTCTT TACCTTCCAC 
    TTCTCTATGT GACTTTCCTA GCAGACTTTT TCCAGGAGGA AGATATGCTC 
    CTAGAGAACG TCTACTACTC AGAGATGAAA GACGCTGGGT TCTTTGATGC 
    TGACTGGGAT TGATCTGCAG ATACCACGCC GTATGACCAC TTTCATGTGA 
    ATTTGCAGTC GTAGCTTTCA TTTCTGGAAC TTAATCTTAG ATGGGAAAAT 
    TGTATGTAAA CAACCGTTAT AATCAAATGA AATATGTAAA TTGATATCGA 
    TATGCTTAAT CTGTAGTAGG TATCTTTTAT GACAGGTGGT TAGCAGCCCA 
    ACTTAGACAA TGGATGAGGA AGGGTGTTTT TAACAACTAC GAAACTATCA 
    CCCTGATGAA TGAATTTACG TTTCTGTAGC CTCGTAAAAA TTCC

    Gene models with high sequence identity

    1. AT3G05010.1 [+] show detail - Protein of unknown function, transmembrane-40
      E-value: 2e-93; Score: 340.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G05010.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, transmembrane-40
    Computational Description
    Protein of unknown function, transmembrane-40; CONTAINS InterPro DOMAIN/s: Protein of unknown function, transmembrane-40 (InterPro:IPR018781); BEST Arabidopsis thaliana protein match is: Protein of unknown function, transmembrane-40 (TAIR:AT5G27210.1); Has 134 Blast hits to 134 proteins in 47 species: Archae - 0; Bacteria - 6; Metazoa - 78; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR