K33950

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33950

Determination of introduced cDNA(s)

J013153I24 - Rice Full-length cDNAs - Original: J013153I24

full reading [+] show sequence

CCTCAATGCT AGCTAAACCA TAGCTAGCTT GCCTACCTCC TCCTCTTCTT 
CTTCTTCTTC TTCAAAAGCT TCTTCAGAGT GGTGGCGATA TCGACTACAC 
ACTGTTCTTG GCTACATCGA TTGATTGATC AGAGAGAGAT ATAACGATAT 
CGATCGGATC AGTTAAATAG AGTAATTGAT CGATATGGGG AAGCTGGTGA 
GCAAGAGCTG GCAGGAGTCG AAGCTGCTGT GGCACATCGC GTTCCCGGCC 
ATCCTGACGG CCGTCTTCCA GTTCTCCATC GGCTTCGTCA CCGTCGGCTT 
CGTGGGCCAC ATCGGCCAGG TCGAGCTCGC CGCCGTCACC GTCGTCGAGA 
ACGTCATCGA GGGCTTCGCC TACGGTGTCC TGCTAGGCAT GGGGAGTGCG 
TTGGAGACGT TGTGCGGGCA GGCGGTGGGT GCTGGGCAGG TGTCCATGCT 
AGGCGTCTAC ATCCAACGCT CATGGATCAT CTGTGGCGCC ACCGCTGTCA 
TCCTCACCCC GACCTACGTC TTCACCGCCG GCATCCTCAT AGGGCTTCGC 
CAGCCCACCG ACATCGCCGC CGTTGCCGGC ACCTACACCC GTTGGGTCAT 
CCCGCAGCTC TTCGCCTACG CTGCCAACTT CCCTCTCCAG AAGTTCTTTC 
AATCGCAGAG CAAGGTGTGG GCCATGACGG CCATCTCCGG CATCGCCCTG 
GCGCTCCACG TTGTGCTCAA CTACATCTTC CTCACCCGCC TCGGCCACGG 
CCTCGTCGCC GCCGCTCTCA TCGGCAATGT CACCTGGTGG CTCATCATTC 
TCGCCCAGTT CATCTACCTC GTCTCCGGCT GCTTCCCGGA GGCTTGGAAG 
GGGTTCTCCA TGCTCGCCTT CAAGAACCTC GCCGCCTTCG TCAAGCTCTC 
GCTCGCCTCC GCCATCATGC TCTGCTTGGA GCTTTGGTAC TACACAGCAG 
TGCTCATCCT TGTCGGCCTC CTAAAGGATG CCAAACTCCA GGTTGACGTC 
ATGTCTGTCT GCATCAATTA CCAGCTCTGG ACCTTGATGG TTGCACTGGG 
CTTCAATGCA GCAGTGAGCG TGAGGGTGTC GAACGAGCTG GGCGCGAACC 
GGCCGAAGGC GGCCAAGTTC GCGGTGGCGA TGGCGGTGTC GACGTCGGCG 
ATCGTCGGCG CCGTTTTCAT GGCCGTGTTC TTCATTTGGA GGACGCAGCT 
GCCGCGCTTC TTCAGCGACG ACGCCGACGT GGTCCGTGAG TCCGCCAAGC 
TCGGCTACCT CCTCGCCGCA ACCATCTTCC TCAACAGCAT CCAGCCCGTC 
CTCTCTGGTG TGGCGATAGG AGCAGGGTGG CAATCACTCG TGGCGTTCAT 
AAACATAGGC TGCTACTACC TGGTTGGCAT CCCACTGGGT GTCCTCTTTG 
GCTTCAAGCT GAAGCTCGAT GCAATGGGGA TTTGGGTGGG TATGTCACTT 
GGCACGCTGC TTCAGACAGC CATACTGGCC TTCATTTCCT TCAGGACAAA 
ACGGGAGAGA CAGGCCATGA TGGCTGAGGA GAGGATCAGA GAGTGGGGAG 
GGAGGAACGA CGACGCGCTG CCGTCCACGA CGACGCCGAC GGCTGATGAT 
CATAACGTAG ATAGATGATG ATGAGATCAG ATGGTTAATT ATTCCTTCAA 
ATTAATTAAA CTTGCAGTTA AATAGTGGAG TTATTTATAC ACACATCACA 
AAAGCTGAGT AGGCTTGTAG AATTATTTTG TACAGATTCA TATATGGTCT 
ATGTAGAGAG AGAAGCTCGG TTTTTATAGG TGCTAAACCT CAGCTTGAAT 
TTCGTTTTGT CTTGCCTTCC TTTTCTTCCA TTTTGGTTGG AAGATGATCA 
GCTGGAAATT ATTGTACTAC TGAGGTTCAT TTTCACATTG AGGTGATTTT 
TTGAGCTCCG TAATT

Gene models with high sequence identity

AT3G26590.1 [+] show detail - MATE efflux family protein
E-value: 7e-136; Score: 481.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Multi antimicrobial extrusion protein MatE	1.6e-77
HMMPfam	Multi antimicrobial extrusion protein MatE	8.4e-27
HMMPfam	Multi antimicrobial extrusion protein MatE	3.5e-35
HMMPanther	MULTIDRUG RESISTANCE PUMP	4.1e-250
HMMPanther	Multi antimicrobial extrusion protein MatE	4.1e-250

See the detailed result >

AT3G26590.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G38030.1); Has 11119 Blast hits to 11024 proteins in 1994 species: Archae - 242; Bacteria - 8025; Metazoa - 141; Fungi - 326; Plants - 1364; Viruses - 0; Other Eukaryotes - 1021 (source: NCBI BLink).
Link: InterPro Scan - TAIR