K34240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34240

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34240

Determination of introduced cDNA(s)

  • J033103F21 - Rice Full-length cDNAs - Original: J033103F21

    full reading [+] show sequence

    Nucleotide sequence: J033103F21 - full reading 
    GTATATTCCT TGCATGGAGA ATTAAGCACA AGAATGAGGA TGCAATGTGG 
    CTATGGGGCA TGTCTGTTGT TTGCGAACTC TGGTTTGGCC TCTCTTGGCT 
    CTTGGATCAG CTGCCAAAGT TGTGCCCTGT TAACCGAGCA ACTGACCTTG 
    CTGTCCTGAA AGATAAGTTT GAGACCCCGA CGCCATCAAA TCCTAACGGA 
    AGATCTGACC TGCCGGGGCT CGATATATTT GTGTCTACTG CTGATCCAGA 
    AAAAGAACCC CCATTGGTCA CAGCAAATAC TATTCTGTCC ATCCTTGCTG 
    CTGATTATCC TGTTGAGAAG CTTTCTTGCT ATGTTTCTGA TGATGGAGGC 
    GCTCTCCTGA CATTTGAAGC AATGGCTGAA GCCGCTAGCT TTGCAAACAT 
    GTGGGTTCCT TTCTGTCGCA AACATGACAT TGAGCCTCGC AACCCAGAGA 
    GCTACTTTAA TCTGAAGAGG GACCCATACA AGAACAAGGT CCGTTCTGAT 
    TTTGTCAAGG ACAGAAGAAG GGTGAAGAGG GAGTACGACG AGTTCAAGGT 
    CAGGATCAAT AGCTTGCCTG ATTCAATCCG TCGCCGCTCC GATGCATATC 
    ATGCCAGGGA GGAAATCAAG GCCATGAAGC GGCAACGAGA GGCTGCTCTC 
    GATGACGTGG TGGAGGCTGT TAAAATCCCT AAAGCTACCT GGATGGCTGA 
    TGGCACGCAT TGGCCTGGTA CCTGGATTCA GCCCTCTGCT GAGCATGCTC 
    GGGGTGACCA TGCTGGAATA ATTCAGGTAA TGCTGAAACC TCCTAGTGAT 
    GATCCCTTGT ATGGAACCAG CGGTGAAGAA GGCAGACCTC TTGATTTCAC 
    TGAGGTTGAC ATCCGTTTGC CAATGTTGGT CTATGTGTCC CGAGAGAAGC 
    GTCCTGGTTA TGATCACAAC AAGAAGGCTG GTGCGATGAA TGCGTTGGTC 
    CGCTCATCTG CTGTCATGTC AAATGGACCT TTCATCCTCA ACCTTGATTG 
    TGATCACTAT GTTTACAACT CACAAGCTTT CCGTGAAGGC ATGTGCTTCA 
    TGATGGATCG TGGTGGTGAC CGTATTGGCT ATGTCCAGTT CCCTCAACGG 
    TTTGAGGGCA TTGATCCATC AGATCGATAT GCTAACCACA ACACTGTCTT 
    CTTCGATGTC AACATGCGTG CACTTGATGG TATCATGGGA CCAGTCTACG 
    TCGGCACTGG ATGTCTTTTC CGTCGCATCG CTTTGTATGG ATTTGACCCA 
    CCGCGCTCCA AGGAACATAG TGGTTGCTGC AGCTGTTGCT TCCCCCAGAG 
    GCGCAAGGTT AAAACTTCCA CAGTTGCATC TGAAGAGAGG CAGGCTTTGA 
    GAATGGCAGA TTTTGATGAT GAGGAAATGA ACATGTCACA ATTTCCCAAG 
    AAGTTCGGTA ATTCAAACTT CCTCATCAAC TCTATCCCAA TTGCTGAATT 
    CCAAGGGCGA CCTCTTGCTG ACCATCCTGG AGTCAAAAAT GGACGTCCTC 
    CTGGTGCTCT CACCGTCCCT CGCGACCTTC TCGATGCTTC CACAGTTGCT 
    GAGGCTATCA GTGTCATCTC ATGCTGGTAT GAAGATAAGA CTGAGTGGGG 
    TCAGCGTGTT GGATGGATCT ATGGTTCAGT CACAGAGGAT GTGGTCACTG 
    GTTACAGGAT GCACAACCGT GGATGGAAAT CAGTTTACTG TGTCACCAAA 
    CGTGATGCTT TCCGTGGCAC TGCACCAATC AACCTTACTG ACCGTCTTCA 
    TCAGGTGCTC CGGTGGGCTA CTGGTTCAGT GGAAATCTTC TTCTCCCGCA 
    ACAATGCACT ACTTGCAAGC CGAAAGATGA AGTTTCTTCA GAGGATTGCA 
    TACCTGAACG TTGGCATTTA CCCCTTCACA TCAATCTTCC TCATTGTCTA 
    CTGCTTCCTG CCAGCCCTGT CCCTCTTCTC GGGACAGTTC ATTGTGCGGA 
    CGCTAAATGT GACCTTCCTG ACCTATCTGC TCGTTATCAC TCTGACAATG 
    TGCATGCTTG CGGTGCTCGA GATCAAGTGG TCAGGCATCA GCTTGGAGGA 
    ATGGTGGAGG AATGAGCAGT TCTGGCTAAT CGGAGGAACT AGCGCCCACC 
    TTGCTGCTGT TCTTCAGGGT CTTCTCAAGG TGATTGCTGG TATCGAGATC 
    TCCTTCACGC TGACATCCAA ATCTGGAGGA GATGAAGCAG ACGACGAGTT 
    TGCTGATCTC TACATCGTCA AGTGGACATC ACTCATGATC CCACCGATCG 
    TCATCATGAT GGTTAACCTG ATCGCCATCG CTGTCGGGTT CAGCAGGACA 
    ATATACAGTG AAATCCCTCA GTGGAGCAAG CTCCTCGGCG GCGTGTTCTT 
    CAGCTTCTGG GTGCTGGCTC ACCTTTACCC CTTCGCCAAG GGGCTAATGG 
    GAAGGAGAGG ACGAACACCG ACCATCGTCT TCGTCTGGTC TGGCCTCCTT 
    GCCATCACCA TCTCATTGCT GTGGGTTGCC ATCAATCCGC CGTCACAGAA 
    CTCGCAGATA GGCGGCTCCT TCACATTCCC CTGAGCTTCC TCATGAACAT 
    GAACCTTTTG TATGATGAAT TATAAGAGTG GTCCCAGTAG CAGTTGTCCT 
    TGCTGTTGGA CAAGTAAATT CTTTACCTAT GTTTACTTAG GTTTTTCTTT 
    TTTTTTTTTG GGTCGAAGAT GATACTATTA TGAATCATGC ATGATACTAG 
    TTCTTTTGTT CGTTTTTGTG CCAAAATGAG AAGAGGTTCT GTTTGGACCT 
    GAACATC

    Gene models with high sequence identity

    1. AT5G16910.1 [+] show detail - cellulose-synthase like D2
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    See the detailed result >

    AT5G16910.1

    Model type
    Protein coding
    Short Description
    cellulose-synthase like D2
    Curator Summary
    encodes a gene similar to cellulose synthase. Located in golgi membranes.
    Computational Description
    cellulose-synthase like D2 (CSLD2); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, response to cold, polysaccharide biosynthetic process, root hair elongation; LOCATED IN: Golgi apparatus, plasma membrane, integral to Golgi membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR