K34341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34341

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34341

Determination of introduced cDNA(s)

  • J033069H17 - Rice Full-length cDNAs - Original: J033069H17

    full reading [+] show sequence

    Nucleotide sequence: J033069H17 - full reading 
    GGAGTTCGGC CATTCTCCAA CCCGCACACC GCAGCCTCTG CCGCCGCCGG 
    CGCTCGGGCT CCTTCCTCGC CGCCGCCGCG CGCCGCCGAC TCCACCGGCC 
    GTCCGCCGTG CCGGACAGGT GATTTGATTT CATCTGCTGA AGGTGGGATT 
    GGGAAATGCC GCTTCATGTT CGCATAAGGG AGAAGACGAG CATAGCGAGT 
    TTGTTGAGTT CCCGGAGGAA CTGGAGTGGT GGTGGGGTTG ATGGTGGAAA 
    GAAGAGTGGC AAAAGAGAAG GTGCTAAAAC GAAAGGAACC AGGACAACTG 
    GTAGGAACAA GAGTGAGAAG AGAGAAGAGC ACAAGGAGGC ACGGGGAAAT 
    GCCGGACAGA GGAGGAGGTG GAGCGACACA AATGGTCAAT CAGATGCGAA 
    GAAGAACGCA TCACAGGCTG TGAGGAGGAA AAGGAAGGGT GATCATGACT 
    CATGGAATGG TGATCACAGT GACACGCCGT ATTCTAAATC AAAGCTGACC 
    AGAAATGGCC CTTCCACCAT GACCCGTGGA AAGGCTTCTG CTAGAAAAGG 
    TGATAGATTT AGGTCTGAGA CTTTGGATGA GGATGATTTG CATTCAAGGA 
    AAAGGGGTAA CAGTATGGTT TCCAGTGTAA GTAGAGGGGG AAGGAGTAAC 
    AGCATGGTTT CTGGTATAAC TAGAGAGGGA AAGAGTCAAT CAGTGTTCAG 
    TAGGAATGCA GAAGCATCAT CCAAAGGGAA GAAGTTTGAT ACACCTACCA 
    GAGTCAGTCG CCAAAAAGAG GCTGCTACAG ATGCCAACTT GGATGATCAT 
    GGCGCCGAAA GCAAGAAGTC GGATGATTCT GGCCAGATTG CTGATGAGAA 
    GCCCCGCCCT CGTCGTACTC GGGTTCTGGA CAAGACTGGG AAAAAAATTA 
    GGGTTGCAAA CAAGGATCCA GTTTCTGACA TTGAGGAAAC CCTTCCTCCC 
    AAGAAGAGGA AGCGGATGAA ACTGGATCCC TATGACACAT CAAACAAAAG 
    ACTTGAGGAT TCTACTGCCA AACAGGATGT TTGTAGTCCA GAGAAGATTC 
    CTGAAAAAAG TCCGCCTGAA GAGACTGAGA CGTCTATAAA TGCTAAATTC 
    CGTGCTATAC AGCCAAGTTC CTCAATCATT TCATATGTGG AAGACAATCT 
    CCTAGGTCGT AGGCGCCTAA ATGAGATAAA AAATGCTAGC TACAATGTTA 
    AGCTCTCTGC CCCTTTGGAT AATGTTCCCT TCTCAACCAG CCCTGAACGT 
    GAGCGCATAG AAGAAAATGT GTTCAGAAAT AAGTTGGAGT TCTTTGCTGC 
    AGCAAAAATT TCGTCATCAT TTCCTCCTCC TACGCTCCCA GAGATAGCAT 
    TTGCAGGGGT ATCAAATGTT GGGAAATCAT CACTACTGAA TGCACTTACA 
    AGGCAATGGG GTGTTGTGCG AACATCGGAT AAGCCAGGAC TTACTCAGAC 
    AATAAATTTC TTCCGGCTTG CATCAAAGCT ATGCCTTGTC GATCTGCCTG 
    GATATGGTTT TGCTTATGCA AAGGATGAAG TTAAAGACTC ATGGCAAGAA 
    CTTGTGAAGG AGTATGTTTC AACCAGGGTC GGCCTAGAAA GAGTGTGCCT 
    TCTTGTGCAC ACTAAACGTG GAATGAAACC ATTGGACTAC GAGCTTGTAG 
    ACCTAATGAA AAGGTCCAAG ACGCCATATC AGATTGTATT GACCAAGACT 
    GATTTGGTTT TCCCTATTGA CGTTGCTCGC CGTGCTGTGG AGATCCAAGA 
    GAGCCTGAAA AAGAACAAGT CAGTGGTCAG ACCGGTGATG ATGGTGAGCT 
    CTAAAACGGG AGCTGGTGTG CGCAACCTGA GAGGGGTGCT TGGGAAGATT 
    GCTCGCTTCA TCAAACCATA ACAAGAAGGT TCAAATTAGT TTGGGGAGTT 
    TGGAGAGTTT TAGCTCTTAA GCAATTTTCA AGCTAGCTTA GAACTTGAGG 
    CCATATCGTA GCATGAGCAA AAGTTTTCTG GGATTTTGGA GGCGTCTTCC 
    ATCTAAGACG TTTGTGTCGC GCAGACAGAA AAACATCCTG ATTCTACATA 
    ATTTATGGCA TGTTAGGCCT ACGTATCGAT GTTTTGGATG GATGTAATAT 
    GACAAACATG ATCACTGGCT CACTGCAACC TGGAAGTACA TTTGAATTTA 
    GAACGCAATA CAC

    Gene models with high sequence identity

    1. AT5G58370.2 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 2e-119; Score: 426.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GTP-binding protein, HSR1-related 2.7e-14
    Gene3D no description 6.7e-45
    superfamily P-loop containing nucleoside triphosphate hyd 9e-34
    HMMTigr GTP-binding protein, ribosome biogenesis, YsxC 5e-57
    HAMAP GTP-binding protein, ribosome biogenesis, YsxC 26.647
    HMMPanther GTP-BINDING PROTEIN ENGB-RELATED 4e-49
    HMMPanther MSS1/TRME-RELATED GTP-BINDING PROTEIN 4e-49

    See the detailed result >

    AT5G58370.2

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: barrier septum formation; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YsxC (InterPro:IPR019987); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G22870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR