K34405

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34405

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34405

Determination of introduced cDNA(s)

  • J033039F18 - Rice Full-length cDNAs - Original: J033039F18

    full reading [+] show sequence

    Nucleotide sequence: J033039F18 - full reading 
    GTCTTTGGTT GGTTTGCTCG TTTTTTTTTT CTTTTCTTGA TCTCTTCTCC 
    TCCTTCCGGG GTTCGCGTTC GCGTCGCTCT CGTCTCGTCT CGTCATGGCA 
    CCACTGAGGG GAGCCAAGCG GCGGAAGCGG CAGCCGGAGA AGGCGTTGCC 
    GGCGGCGGGG CAGGCGATGC CGGCGCCGGC GCCCGGCGGG GATTGGTGGG 
    ACGGCTTCGC CCGCAGGCTT GCAGCAGGAC AATTTTCCAA AGACTGCCAA 
    AACTTTGAGT CCGTCTTCAA GATGTCGAGG AAGACCTTTG ACTACCTTTG 
    CTCTCTGATT AGTGGGGACT TCACAAGAAA GACACAAAGT TTCAGAAATT 
    TCAGGTTTGG AGACAAGGCA ATTCTAGGCG TGGAAGATCA AGTAGGTGTT 
    GCTCTGTTAA GATTGACCAC CGGTGAGTCG CTTTTGAGCA TAGGGAACCG 
    CTTCGGGATG AACCACTCAG CTATCTCAAA CATCACTTGG AAGTTTATTG 
    AGGCCTTGGA GGAGCGCGCT GCCAATCATC TTAAGTGGCC TACTCCTGAG 
    GAGATGGCAA CCGTCAAATC TAAGTTTGAA AAGATTCAGG GCCTCCCCAA 
    CTGCTGCGGC GCCATAGACA CAACGCACAT CCTCATGTGC TCTTCAGCTC 
    AGCCTAACAG CAATGTCTGG CTCGACGGCG AGAACAGGAA CAGCATGGTC 
    CTGCAGGCCA TCGTCGATGC CGACATGCGG TTCAGAGACG TTGTCAGTGG 
    CTGGCCTGGC AGCTTGAATG ACTCGTGCAT CCTGCGCACC TCAGGATTCT 
    ACAGGCTATG CGAGAAAGGC GCGAGGCTGG ACGGACAAAC GGAGCTTCCA 
    GGAGAGCCAG CTGGGTCAGT GGTCAGAGAC TACATTCTTG GGGATGCAAG 
    CTACCCTCTC CTTCCCTGGC TGATGACTCC ATACCGTGAG AAGGATCTAT 
    CTCCGGCGAA AGCCGACTTC AACAAGCGGC ACGCCGCGAC GATCATGGTG 
    GTGCAGGGTG CTCTGGCCAA GCTGAAGGAG AGGTGGCAGG TTCTCAAGGG 
    AGAGCTGTGG AGGCCGGACA AGCACCGGCT GCCGAGGATC ATCTACGTCT 
    GCTGCCTGCT CACCAACATC ATGATCGACC TCGAGGACGC GGCGAGGGGC 
    GGCATGCCGC CGTCGCACAA CCACGACGAC GGCTACCGGC AGCAGTTCAG 
    CGATGTCGCC GACGTCGGCG CGGCCGCGCT GAGGGACCAG CTGTGCCAGT 
    ATGTGAGCAG GATTGGCAGC AGTTTGCCGG CGTGATTCTG GTCGCTTTGC 
    TTGATTACTT TTGTCTCTTT TTGTTTACCT TGACATGAGA TGAAACATAC 
    CAACAGGTGA TAGAATTGTA ATGCGAATTT TGGTTACTTT CGATGATTGG 
    TCGGTTTTGA TAGC

    Gene models with high sequence identity

    1. AT3G55350.1 [+] show detail - PIF / Ping-Pong family of plant transposases
      E-value: 5e-109; Score: 391.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Harbinger transposase-derived nuclease, Putative 9.2e-11
    HMMPanther UNCHARACTERIZED 2.3e-32

    See the detailed result >

    AT3G55350.1

    Model type
    Protein coding
    Short Description
    PIF / Ping-Pong family of plant transposases
    Computational Description
    PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR