K34546

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34546

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34546

Determination of introduced cDNA(s)

  • J023082F22 - Rice Full-length cDNAs - Original: J023082F22

    full reading [+] show sequence

    Nucleotide sequence: J023082F22 - full reading 
    GAAGGACCCC GAGAGGTCGT CGAATGGCAA CTCCGCCTCC CTCGAACCCG 
    ACGACGACGC TCCGAGTCGG CTCTCACTGA TCGCTTCTAG AAGCTTCCGG 
    AAGGCTCCGA CCCCCCGCCA TGGCCGCGCC CTTCTTCTCC ACGCCTTTCC 
    AGCCCTACGT CTACCAGAGC CAGGAAGGAT CTGTGACGGC GTTCCAGATA 
    TCCGGCGGCG ATGTGCAGGT CCTGCAGGTG ATGGTTAAGT CACAGGAAAA 
    GTTGACCGTG AAACCAGGTA CAATGTGCTA CATGTCTGGT AATATTCAAA 
    CGGACAACAA CTACTTGCCT GAAAATGATG GAGGTGTGTG GCAGTGGATT 
    TTTGGGAAAA GCATAAGCAG CAGTGTTTTC TTCAACCCTG GCTCTGATGA 
    TGGATATGTT GGGATTTCTG CACCATTTCC TGGGAGAATA CTGCCTATGG 
    ATCTAGCAAA CTTTGGTGGA GAACTTCTTT GCCAGGCAGA TGCTTTTCTC 
    TGCTCAGTTA ATGATGTGTC AGTCACAAGT ACAGTTGAGC AGAGGCCGCG 
    AAACATTGAA ATTGGTGCAG AGGTGATCCT CAAACAGAAG CTTAGGGGTC 
    AAGGGATGGC TTTCCTTGTT GGTGGTGGAT CAGTCATGCA GAAAATTCTT 
    GCCCCTCGTG AGGTGATTAC AGTTGACGCT GCTTGTATTG TGGCTATGAC 
    AACCACCATC AACTTTCAGT TGAAAACCCC TAACCAACCG AGAAGAGTAG 
    TCTTCAGTGG GGGTAACCAG CTTACAGCAT CTCTCACAGG ACCAGGCGTG 
    GTCTTCATAC AGAGCCTACC CTTTCATCGG CTTTCACAAC GCATTGCAAG 
    TAGATCAGTG GCCGCTCCGA GCTTGAGGGA CAATCCCAAG TTCTTCATCC 
    AGATTGTCAT GTTCTTCTTC CTCGCGTATG TCATGATTGT ATCATCGATA 
    ATTCTGACAG ATGTTTAGAT GCTGCAACAA GCTACTAGTC GCGTATGTCT 
    TAGAGAGTCA TCAAATTGAA AGAGTAAAAT CTCTTGCAAG TTTGCAACTC 
    AAAGTGCATT CTCCACCACC GACCCCCTTG TAGATGTGTC TCACTGGCTC 
    CGTTTCAAGT TGAAAAGAAG GCAGTGCACA ACTGTTGTTA GAAAGTTAAA 
    TGCAAAGTTC AATGAATCGT TCTTTTGTAA TACTTGCAGC GGCGAGATCT 
    TGTTGGTCAA TGAGTTCAAT TTTCACAGCA TATGGTGAAT ATACACTAAG 
    GAGTGATTAT ATCTGCACTT ATTGGCAGTA CATATCGCTT AATAGATTGT 
    CAGGATTATG TAACTAGTAA TCCCTCCTTT TTTAATATAT AAACATTTGT 
    TAATGACTAC ACCCTCGTCT CAAAATATAA GGGTTTTTTA ATATATAAAT 
    ATTTGTTAAT GACTGGG

    Gene models with high sequence identity

    1. AT4G17420.1 [+] show detail - Tryptophan RNA-binding attenuator protein-like
      E-value: 4e-99; Score: 358.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF124 7.2e-42
    superfamily Tryptophan RNA-binding attenuator protein-like 8e-36

    See the detailed result >

    AT4G17420.1

    Model type
    Protein coding
    Short Description
    Tryptophan RNA-binding attenuator protein-like
    Computational Description
    Tryptophan RNA-binding attenuator protein-like; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: Tryptophan RNA-binding attenuator protein-like (TAIR:AT5G47420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR